Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq479 165 1e-35 seq9 122 1e-22 seq1 114 2e-20 >seq479 Length=110724 Score = 165 bits (182), Expect = 1e-35 Identities = 712/1120 (64%), Gaps = 33/1120 (3%) Strand=Plus/Plus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||| || | ||||| | || | || |||||||||| || | | ||||||| Sbjct 13821 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13880 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 13881 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13940 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 13941 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14000 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 || | || || ||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 14001 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 14055 Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || || || |||| || ||||| | || | | || || || || || || Sbjct 14056 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14112 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 14113 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 14172 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 14173 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14232 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 14233 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14289 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 14290 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14349 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCT 106682 | || ||| || || ||| | | || | |||| | | | | ||| |||| Sbjct 14350 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCCTGCCCT 14408 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | |||||| | || || |||||| || ||||| |||||| || || | Sbjct 14409 GCCTCTCGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAG 14468 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || | | ||||| | ||||| ||| | ||| | || || ||||||||||||| Sbjct 14469 GGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAA 14528 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 | || | ||||| |||| | || ||||| | | || |||| || | ||| |||| Sbjct 14529 GATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGT 14588 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | ||| |||| ||| || | | ||| |||||||| ||||||||||||| |||| Sbjct 14589 TCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGA 14648 Query 106923 TAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 | || ||||| ||| |||||| || || || |||||||||| | Sbjct 14649 AGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAG 14705 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 107036 | || ||||| ||||| || || | || | |||||| || || ||| || | Sbjct 14706 CTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT 14765 Query 107037 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 107096 | || | | || || ||||| | |||||||| || || ||| ||||| || |||| Sbjct 14766 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 14825 Query 107097 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 107156 | | | ||||| | |||||||| | || ||||| ||||| |||| | ||||||| Sbjct 14826 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 14885 Query 107157 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 | ||||| || |||| || ||||| || ||||| || Sbjct 14886 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925 >seq9 Length=10661 Score = 122 bits (134), Expect = 1e-22 Identities = 286/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Minus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||||||||| || | ||||| | | |||||||| | ||| |||||| || | Sbjct 7899 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 7840 Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407 ||||||||||| |||| ||||| || ||||||||||||| | | |||||| | Sbjct 7839 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 7783 Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466 || | ||||| |||| | || ||| ||| |||||||| || || | | || Sbjct 7782 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGC 7724 Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526 || || |||||||| ||||| ||||||||||| || || || || || || || Sbjct 7723 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 7664 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||||| || | ||| | ||| || ||||| ||| | || |||| Sbjct 7663 GTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTC 7604 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 ||||||||| || || | || |||| || || | || || || || ||||| ||||| Sbjct 7603 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7544 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 | |||| || | ||| ||| || | | || || | ||| ||| |||||||| Sbjct 7543 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 7484 Query 168707 ATCCGCCA 168714 || |||| Sbjct 7483 GTCGGCCA 7476 >seq1 Length=728537 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||| ||||| || || || || || |||||| || || Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 440941 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||||||| ||||| |||| || |||||| |||| Sbjct 440942 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 440981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974177465520