Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 176 1e-38 seq479 98.7 2e-15 seq512 93.3 9e-14 >seq1 Length=728537 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || ||||||||||| ||||||||||||||||||| |||||| Sbjct 455262 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 455203 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || ||||| || ||||| || ||||| || | ||| || ||||| || || || || Sbjct 455202 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACC 455143 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||| || || |||||| || || ||||| || || ||||| |||||||| Sbjct 455142 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 455083 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| ||||| | |||||| Sbjct 455082 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| ||||| || ||||| |||| |||||| | ||||| || Sbjct 455757 AACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 455698 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| || || || | |||||| || || |||||||| ||||| ||||| || Sbjct 455697 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 455638 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || ||||| || || |||||||| || | ||||| Sbjct 455637 AATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 455578 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || || || | ||||| Sbjct 455577 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 138 bits (152), Expect = 3e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| |||| ||||| || |||||||| ||||||||||| || ||||| | ||||| Sbjct 454942 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 454883 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||| ||||| || || || |||||||| || || |||||| || || ||||||| Sbjct 454882 GCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGT 454823 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | ||| ||||||||||| || | ||||| || || | || || ||||| | ||||| Sbjct 454822 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCA 454763 Query 195140 T 195140 | Sbjct 454762 T 454762 Score = 134 bits (148), Expect = 3e-26 Identities = 151/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || || || ||||| ||||| ||||||||||||| |||||| Sbjct 456050 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 455991 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || || || || |||||||| |||||||| || || || || || || Sbjct 455990 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 455931 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095 || |||||||| || || |||||| || || ||||| || ||| ||| ||||| Sbjct 455930 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGA---TTCGACTTC 455874 Query 195096 AAGGGTAACCGTCTTTCCTGT 195116 ||| || | ||||| || || Sbjct 455873 AAGAGTGATTGTCTTACCCGT 455853 Score = 132 bits (146), Expect = 1e-25 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||||||| | | ||||| ||||| || || ||||| || |||||||| | |||||||| Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 455387 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| | Sbjct 455386 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 455327 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| || | |||||||| || | |||||| ||||| | ||||| Sbjct 455326 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 >seq479 Length=110724 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||||||| |||||| |||||||||||||||||| | || || | ||||||||| Sbjct 14555 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 14496 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| ||| | |||||| || |||||||||| || ||||| ||| || || | Sbjct 14495 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTG 14436 Query 160707 AGACTCTTTATGAAAGATACGA 160728 | | |||||||| || ||||| Sbjct 14435 AAAAGCTTTATGAGAGTTACGA 14414 >seq512 Length=93957 Score = 93.3 bits (102), Expect = 9e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||| || || || || ||||||||||| || |||||||| | ||| || | Sbjct 79121 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 79180 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| || || || || || ||||| || || || |||||| || || |||||||| | Sbjct 79181 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 79240 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || || ||||| | |||||||| || Sbjct 79241 AGGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 79274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468834720766