Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq590 113 4e-19 seq1 109 4e-18 seq13 96.9 3e-14 seq157 87.8 1e-11 >seq590 Length=83274 Score = 113 bits (124), Expect = 4e-19 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122 ||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| | Sbjct 82875 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 82934 Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180 ||| | |||||||| || || |||||| || || |||||| ||| ||| |||| Sbjct 82935 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 82991 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 |||||||| || || || || | | ||||| ||| | |||||||| || |||||| Sbjct 82992 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 83051 Query 550241 CATTGGCCTTTC 550252 |||||||||||| Sbjct 83052 CATTGGCCTTTC 83063 >seq1 Length=728537 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| | Sbjct 455765 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 455708 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||||||||| || |||||||| | || |||||||||||||||||| |||| Sbjct 455707 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 455648 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || || || || || || |||| || | | ||| ||| Sbjct 455647 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAG-ACGACTCGACTTCAAGA 455589 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| || || || | ||| || || || || |||||| Sbjct 455588 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 455547 Score = 102 bits (112), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| || || ||| |||| |||||||||||| | |||||| Sbjct 455259 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 455202 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||| |||||||| ||||| | || ||||| ||||| || || || Sbjct 455201 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 455142 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || || || || || ||||||| | | || ||| || Sbjct 455141 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 455083 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || || ||||| ||||| ||||||||| Sbjct 455082 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 455040 Score = 102 bits (112), Expect = 7e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| ||||||||||| | |||||| Sbjct 456047 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 455990 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 455989 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 455930 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 455929 TCCTTGTCTTGGATCTT 455913 Score = 93.3 bits (102), Expect = 3e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356 ||||||||| | ||||| ||| || ||||| |||||||| || || | || ||| | Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 455387 Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 | |||||||| || || || || || ||||| || || || ||||| || |||| Sbjct 455386 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 455327 Query 563417 TGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | | || ||||| | ||| || || ||||||||||| |||||||| |||||| Sbjct 455326 AG-GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCATA 455268 >seq13 Length=428818 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||||||||| | || || | ||| || | | ||| || ||| |||| Sbjct 392557 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 392616 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 392617 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 392676 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | ||||| | ||||| Sbjct 392677 CATAGCGTGGAACCAGAATTC 392697 >seq157 Length=258474 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 |||| || || || || || || || ||||| || |||| || ||||| || || || Sbjct 252972 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 253031 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||| || ||| | || || ||||||||||| |||||||||||||| || |||| Sbjct 253032 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 253091 Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579 || || ||||| | | | ||| | || | || || |||||||| || | |||| Sbjct 253092 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 253151 Query 550580 GGTA 550583 |||| Sbjct 253152 GGTA 253155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029248509710020