Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq590 113 4e-19
seq1 109 4e-18
seq13 96.9 3e-14
seq157 87.8 1e-11
>seq590
Length=83274
Score = 113 bits (124), Expect = 4e-19
Identities = 143/192 (74%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122
||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| |
Sbjct 82875 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 82934
Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180
||| | |||||||| || || |||||| || || |||||| ||| ||| ||||
Sbjct 82935 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 82991
Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240
|||||||| || || || || | | ||||| ||| | |||||||| || ||||||
Sbjct 82992 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 83051
Query 550241 CATTGGCCTTTC 550252
||||||||||||
Sbjct 83052 CATTGGCCTTTC 83063
>seq1
Length=728537
Score = 109 bits (120), Expect = 4e-18
Identities = 160/222 (72%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| |
Sbjct 455765 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 455708
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| ||||||||||| || |||||||| | || |||||||||||||||||| ||||
Sbjct 455707 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 455648
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || || ||||| || || || || || || |||| || | | ||| |||
Sbjct 455647 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAG-ACGACTCGACTTCAAGA 455589
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||| || || || | ||| || || || || ||||||
Sbjct 455588 GTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 455547
Score = 102 bits (112), Expect = 7e-16
Identities = 159/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| || || ||| |||| |||||||||||| | ||||||
Sbjct 455259 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 455202
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||| |||||||| ||||| | || ||||| ||||| || || ||
Sbjct 455201 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 455142
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432
|| || ||||| || || || || || || ||||||| | | || ||| ||
Sbjct 455141 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 455083
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||||| || || || ||||| ||||| |||||||||
Sbjct 455082 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 455040
Score = 102 bits (112), Expect = 7e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| ||||||||||| | ||||||
Sbjct 456047 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAATCGGAAAGAGTT 455990
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 455989 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 455930
Query 563374 TCTTTATCTTGAATTTT 563390
|| || ||||| || ||
Sbjct 455929 TCCTTGTCTTGGATCTT 455913
Score = 93.3 bits (102), Expect = 3e-13
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356
||||||||| | ||||| ||| || ||||| |||||||| || || | || ||| |
Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 455387
Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416
| |||||||| || || || || || ||||| || || || ||||| || ||||
Sbjct 455386 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 455327
Query 563417 TGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| || | | || ||||| | ||| || || ||||||||||| |||||||| ||||||
Sbjct 455326 AG-GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCATA 455268
>seq13
Length=428818
Score = 96.9 bits (106), Expect = 3e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||||||||| | || || | ||| || | | ||| || ||| ||||
Sbjct 392557 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 392616
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 392617 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 392676
Query 390975 CATAACTTGGAAGAAAAATTC 390995
|||| | ||||| | |||||
Sbjct 392677 CATAGCGTGGAACCAGAATTC 392697
>seq157
Length=258474
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/184 (71%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
|||| || || || || || || || ||||| || |||| || ||||| || || ||
Sbjct 252972 GTAAAAAGCGTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGT 253031
Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522
||||| || ||| | || || ||||||||||| |||||||||||||| || ||||
Sbjct 253032 GCCATTGCCGGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCC 253091
Query 550523 TATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGA 550579
|| || ||||| | | | ||| | || | || || |||||||| || | ||||
Sbjct 253092 TACGGTCTTGACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGT 253151
Query 550580 GGTA 550583
||||
Sbjct 253152 GGTA 253155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029248509710020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |