Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq334 134 1e-26 >seq334 Length=594113 Score = 134 bits (148), Expect = 1e-26 Identities = 240/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 342879 TTTGGGTTCCAAGCTGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 342820 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATG-TCCGTGTA 30161 | | ||||||| || || || || | ||| |||||| || || || ||||| Sbjct 342819 ATTACCCTTTGCAGTTGGTCGACTCCTTTGCCCTTATAGTCT-CCGTCGGCATCAGTGTA 342761 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 ||| || || ||||| ||||| |||||||||||||| |||||||| || || || || Sbjct 342760 CTCGGCACCAAAATGTCTCCATTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 342701 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 ||| ||| || ||| |||| ||| ||| || ||||| | ||||||||| ||| Sbjct 342700 GTGGCCGAGCCCGACCTTCTCCAGAAATTCTTTGCTTCCGTTACCATCCCAGATCCCTAC 342641 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 342640 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCACAAAAGCTCGGC 342581 Query 30342 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 342580 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 342537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613127935754