Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 174 3e-38 seq479 102 2e-16 >seq1 Length=728537 Score = 174 bits (192), Expect = 3e-38 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||| |||| | || ||||| || ||||||| |||| |||| Sbjct 440813 AGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGA 440872 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||||||||||| || | || || |||||||| || | ||||||||| |||| Sbjct 440873 AGGTGAGACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAG 440932 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || || || || |||| | ||| |||||| ||| || | Sbjct 440933 AGAAGAAGATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTT 440992 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||||| ||| |||||||| |||||||| ||| || || || || || | Sbjct 440993 GGTCAGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCA 441052 Query 48363 TGGC 48366 | || Sbjct 441053 TAGC 441056 >seq479 Length=110724 Score = 102 bits (112), Expect = 2e-16 Identities = 286/436 (66%), Gaps = 5/436 (1%) Strand=Plus/Plus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||||||||| || || || ||||| ||| || |||||| || |||| || ||||| Sbjct 14234 TACTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTG 14293 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||||| | |||||||| |||||||||| ||||| ||| || ||||| || | | Sbjct 14294 GACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCC 14353 Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 | || || | ||| || | | ||| |||| ||| | || || | Sbjct 14354 TCGAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCCTGCCCTGCCT- 14412 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||| || || |||| | ||||| | || | || | | ||||| || Sbjct 14413 --CTCGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 14470 Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 || ||||||||||| || |||| ||||| || | ||| | || |||||| || Sbjct 14471 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 14530 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || | || ||| || ||| ||| || || | | || | | ||| ||| ||| ||| Sbjct 14531 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTAC-CTCCTCCTTACCATGGTT 14589 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || | | || | |||||||| | || |||||||| ||||| | |||||||| || Sbjct 14590 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 14649 Query 213950 GGCGCCCGGCCTCTTG 213965 ||| || || | |||| Sbjct 14650 GGCACCAGGACGCTTG 14665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931522343544320