Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq479 196 9e-45
seq1 127 4e-24
>seq479
Length=110724
Score = 196 bits (216), Expect = 9e-45
Identities = 713/1094 (65%), Gaps = 43/1094 (4%)
Strand=Plus/Plus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424
|| ||||| || || |||| ||| || ||||| | |||| ||| || ||| | ||
Sbjct 13862 CCTTCGTAAGATTCATAGGTACCAAACTCCTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 13920
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
|||||||| || ||||| |||||| | |||||| | | ||||| | || |||
Sbjct 13921 CGCGTGGTATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 13980
Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||| || || | |||||| ||||||| || ||||| || || | ||| | || |
Sbjct 13981 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTC 14039
Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
|| | | ||||||| |||| || || ||||| ||||| |||| | ||| |
Sbjct 14040 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 14097
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
| ||| |||||| || | || || | |||| |||||| | |||| |
Sbjct 14098 AGTGTCAAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 14151
Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721
| ||| | ||| | || || || || || || |||| || || ||
Sbjct 14152 ATAGACGC----GACGTTCAAGG--TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 14205
Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781
||| || || || || || | ||||| ||||| || ||||||||||| ||| |
Sbjct 14206 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 14265
Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841
|||||||| || ||||| || || || |||||| |||||||| ||||||||| ||
Sbjct 14266 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 14325
Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899
||||||| |||||||| |||||| | || || | ||| || | ||||| |
Sbjct 14326 GTAAGGGACA-CCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 14383
Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959
| | || || | | |||| ||| | | | | ||| ||| | |||||
Sbjct 14384 TTGATAGTTTTCCTTCCCCTGCCCTGCCTCTCGTAACTCTC---ATAAAGCTTTTCAAAT 14440
Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019
| ||||||||| | ||| | || || || ||| |||||||||||| ||| |||| | |
Sbjct 14441 TCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 14500
Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079
| | || ||| | || |||||| || || | |||||| || || | || |||||
Sbjct 14501 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCA 14560
Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139
| | || ||||||| || | ||| ||||| | || | || ||||| | |||
Sbjct 14561 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 14620
Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199
|||||||| ||||| ||||||| ||| | || || || |||||||| ||||| |||||
Sbjct 14621 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCA 14680
Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254
|| ||| || | |||| | ||| | || || | || | | ||||||||
Sbjct 14681 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATGCCGTTGGAGT 14735
Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311
||| ||||| || |||||| | || || | || || || | | | | |
Sbjct 14736 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 14792
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| ||||||||||| || |||||| || ||| |||||||||| || ||| || |
Sbjct 14793 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 14852
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431
| || ||||| ||||| | | || || || || || ||||| || | | || | ||
Sbjct 14853 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 14912
Query 222432 AGGCGTTAAACAGC 222445
|||||| || |||
Sbjct 14913 CGGCGTTGAAAAGC 14926
>seq1
Length=728537
Score = 127 bits (140), Expect = 4e-24
Identities = 132/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| |||||||| || | || |||||||| |||||||| ||||| ||| ||||| ||
Sbjct 440981 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 440922
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
||| ||||||||||||| ||| || || |||||| || || ||| || ||||||
Sbjct 440921 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 440862
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042
|||||| | |||||||||||||||| || |||||||| || |||| |||
Sbjct 440861 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 440809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928834373717120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |