Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq479 196 9e-45 seq1 127 4e-24 >seq479 Length=110724 Score = 196 bits (216), Expect = 9e-45 Identities = 713/1094 (65%), Gaps = 43/1094 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424 || ||||| || || |||| ||| || ||||| | |||| ||| || ||| | || Sbjct 13862 CCTTCGTAAGATTCATAGGTACCAAACTCCTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 13920 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||| || ||||| |||||| | |||||| | | ||||| | || ||| Sbjct 13921 CGCGTGGTATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 13980 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || || | |||||| ||||||| || ||||| || || | ||| | || | Sbjct 13981 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTC 14039 Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 || | | ||||||| |||| || || ||||| ||||| |||| | ||| | Sbjct 14040 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 14097 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 | ||| |||||| || | || || | |||| |||||| | |||| | Sbjct 14098 AGTGTCAAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 14151 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | ||| | ||| | || || || || || || |||| || || || Sbjct 14152 ATAGACGC----GACGTTCAAGG--TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 14205 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| || || || || || | ||||| ||||| || ||||||||||| ||| | Sbjct 14206 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 14265 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 |||||||| || ||||| || || || |||||| |||||||| ||||||||| || Sbjct 14266 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 14325 Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899 ||||||| |||||||| |||||| | || || | ||| || | ||||| | Sbjct 14326 GTAAGGGACA-CCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 14383 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | | || || | | |||| ||| | | | | ||| ||| | ||||| Sbjct 14384 TTGATAGTTTTCCTTCCCCTGCCCTGCCTCTCGTAACTCTC---ATAAAGCTTTTCAAAT 14440 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||||||||| | ||| | || || || ||| |||||||||||| ||| |||| | | Sbjct 14441 TCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 14500 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | | || ||| | || |||||| || || | |||||| || || | || ||||| Sbjct 14501 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCA 14560 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| || | ||| ||||| | || | || ||||| | ||| Sbjct 14561 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 14620 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 |||||||| ||||| ||||||| ||| | || || || |||||||| ||||| ||||| Sbjct 14621 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCA 14680 Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 || ||| || | |||| | ||| | || || | || | | |||||||| Sbjct 14681 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATGCCGTTGGAGT 14735 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311 ||| ||||| || |||||| | || || | || || || | | | | | Sbjct 14736 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 14792 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | ||||||||||| || |||||| || ||| |||||||||| || ||| || | Sbjct 14793 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 14852 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||||| ||||| | | || || || || || ||||| || | | || | || Sbjct 14853 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 14912 Query 222432 AGGCGTTAAACAGC 222445 |||||| || ||| Sbjct 14913 CGGCGTTGAAAAGC 14926 >seq1 Length=728537 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || |||||||| || | || |||||||| |||||||| ||||| ||| ||||| || Sbjct 440981 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 440922 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||| ||| || || |||||| || || ||| || |||||| Sbjct 440921 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 440862 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| | |||||||||||||||| || |||||||| || |||| ||| Sbjct 440861 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 440809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834373717120