Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq590 131 1e-24 seq1 125 5e-23 seq13 87.8 1e-11 >seq590 Length=83274 Score = 131 bits (144), Expect = 1e-24 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||||||| |||| | ||| |||||| Sbjct 82875 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 82934 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 ||||| || ||||| || || |||||| |||| |||||| || ||| |||| ||| Sbjct 82935 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 82994 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | ||||| || ||||| ||| | ||| || || || | || ||| ||| Sbjct 82995 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 83054 Query 474581 TGGCCTTTTAAGGTGAT 474597 |||||||| ||||| || Sbjct 83055 TGGCCTTTCAAGGTAAT 83071 >seq1 Length=728537 Score = 125 bits (138), Expect = 5e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || ||||| | || ||||| || || ||| |||| ||| ||| ||||| | |||| Sbjct 455261 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 455204 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| | ||||||||||||||||| || ||||| | || || || ||||| || || | Sbjct 455203 TTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATAC 455144 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | ||||||||||| ||||| |||||| || || ||||||| | | ||||| Sbjct 455143 CCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAA 455084 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| ||||| |||||||| || || ||||| ||||| Sbjct 455083 GGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 455044 Score = 114 bits (126), Expect = 8e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 454928 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 454869 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 || || ||||||||||| ||||| |||||| || || || || | | | | Sbjct 454868 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 454810 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || ||||| ||||||||||| ||||| ||||||||||| Sbjct 454809 TTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTG 454765 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 455769 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 455710 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || ||||||||||| | ||||| |||||||||||||| || Sbjct 455709 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 455650 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || || ||||| |||| | | | ||||| Sbjct 455649 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGA-CTTCAA 455591 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || ||||| | |||||| || || || || Sbjct 455590 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 455551 Score = 109 bits (120), Expect = 4e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| ||| || ||||||||||| || || || | |||||||| Sbjct 455444 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 455385 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716 |||||||| || || |||||||| |||||||| |||||| ||||| || |||| | Sbjct 455384 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 455325 Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 455324 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTG 455272 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| ||||| | |||||| Sbjct 456049 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 455990 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||||||||| ||||| || || || || ||||| |||||||| || || || Sbjct 455989 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 455930 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||||| ||||| |||||| || || ||||| Sbjct 455929 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 455889 >seq13 Length=428818 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746 |||||| |||||||||||||| | || || | || || | ||| || ||| |||| Sbjct 392557 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 392616 Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806 ||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || | Sbjct 392617 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 392676 Query 318807 CATAACTTGGAAAAAGAATTC 318827 |||| | ||||| ||||||| Sbjct 392677 CATAGCGTGGAACCAGAATTC 392697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268140680422904