Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq590 131 1e-24
seq1 125 5e-23
seq13 87.8 1e-11
>seq590
Length=83274
Score = 131 bits (144), Expect = 1e-24
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||||||| |||| | ||| ||||||
Sbjct 82875 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 82934
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
||||| || ||||| || || |||||| |||| |||||| || ||| |||| |||
Sbjct 82935 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 82994
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | ||||| || ||||| ||| | ||| || || || | || ||| |||
Sbjct 82995 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 83054
Query 474581 TGGCCTTTTAAGGTGAT 474597
|||||||| ||||| ||
Sbjct 83055 TGGCCTTTCAAGGTAAT 83071
>seq1
Length=728537
Score = 125 bits (138), Expect = 5e-23
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
|| ||||| | || ||||| || || ||| |||| ||| ||| ||||| | ||||
Sbjct 455261 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 455204
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
||| | ||||||||||||||||| || ||||| | || || || ||||| || || |
Sbjct 455203 TTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATAC 455144
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729
| ||||||||||| ||||| |||||| || || ||||||| | | |||||
Sbjct 455143 CCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAA 455084
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||||| ||||| |||||||| || || ||||| |||||
Sbjct 455083 GGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 455044
Score = 114 bits (126), Expect = 8e-20
Identities = 126/165 (76%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 454928 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 454869
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724
|| || ||||||||||| ||||| |||||| || || || || | | | |
Sbjct 454868 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 454810
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||||| || ||||| ||||||||||| ||||| |||||||||||
Sbjct 454809 TTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTG 454765
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| ||| || || | || || || | |||||
Sbjct 455769 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 455710
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || ||||||||||| | ||||| |||||||||||||| ||
Sbjct 455709 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 455650
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| |||||||| || || || ||||| |||| | | | |||||
Sbjct 455649 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGA-CTTCAA 455591
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| || ||||| | |||||| || || || ||
Sbjct 455590 GAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTG 455551
Score = 109 bits (120), Expect = 4e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| ||| || ||||||||||| || || || | ||||||||
Sbjct 455444 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 455385
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716
|||||||| || || |||||||| |||||||| |||||| ||||| || |||| |
Sbjct 455384 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 455325
Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | ||||| || ||||| || ||||| ||||| || |||||||| ||
Sbjct 455324 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTG 455272
Score = 93.3 bits (102), Expect = 3e-13
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| | || ||||| || ||| || || | ||| ||||| | ||||||
Sbjct 456049 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 455990
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | |||||||||||| ||||| || || || || ||||| |||||||| || || ||
Sbjct 455989 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 455930
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
||||||||||| ||||| |||||| || || |||||
Sbjct 455929 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 455889
>seq13
Length=428818
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746
|||||| |||||||||||||| | || || | || || | ||| || ||| ||||
Sbjct 392557 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 392616
Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806
||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || |
Sbjct 392617 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 392676
Query 318807 CATAACTTGGAAAAAGAATTC 318827
|||| | ||||| |||||||
Sbjct 392677 CATAGCGTGGAACCAGAATTC 392697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268140680422904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |