Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq479 140 4e-28 seq9 129 7e-25 seq1 114 2e-20 >seq479 Length=110724 Score = 140 bits (154), Expect = 4e-28 Identities = 707/1118 (63%), Gaps = 29/1118 (3%) Strand=Plus/Minus Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || ||||| || ||||| || |||| || ||||| |||||||| | |||| ||| Sbjct 14925 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14866 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 14865 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14806 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 14805 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14746 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 14745 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14686 Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619 || || |||||| || | |||| | || || |||| |||| | || || Sbjct 14685 TACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14629 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| | | || ||| |||| ||| | ||||| ||| | || |||| Sbjct 14628 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14569 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | ||||| || | |||| ||||| | || |||||||||||||| || || Sbjct 14568 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14509 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | ||| | ||| ||||| | ||||| | | || || || || |||||| Sbjct 14508 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14449 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATGCGAC 75858 ||||| || |||||| || || | ||| ||||| |||| || | | || Sbjct 14448 GGTGAAGAATTTGAAAAGCTTTA-TGAGAGTTACGAGAGGCAGGGCAGGGGAAGGAAAAC 14390 Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 | | |||| | || | ||||| || || ||| | | || || |||||||| | Sbjct 14389 TATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 14331 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | || || |||||||||||| ||| ||| ||||||||| | | || || | Sbjct 14330 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 14271 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 |||| | || || || || ||||| | ||||| | | ||||| |||| Sbjct 14270 TCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTG 14211 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG 76097 | || ||| | || || | || ||||| | || | || |||| | || Sbjct 14210 TCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTATG 14151 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | | |||| || || || || || ||| ||||||| || || || || || || Sbjct 14150 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 14091 Query 76158 ACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | | || | ||||| || |||| || || || || || ||||| || ||||| Sbjct 14090 CCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGACCTG 14034 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269 ||||| | ||||| || ||||| || || | ||| || | || |||| || Sbjct 14033 TTGGTCTTGGTGTCCAGGGTCTTGCCGACG-----CTTTCATGGCCCTTCGCATGCCGTT 13979 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || || | ||| || | ||| | ||| | ||||| || || || || ||||| | Sbjct 13978 CGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGC 13919 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 || |||||| || ||| | || || | ||| ||||||| | | || ||||| Sbjct 13918 GCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTC 13859 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 |||| || | || | ||||||| || ||||||| Sbjct 13858 TCCCATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 13821 >seq9 Length=10661 Score = 129 bits (142), Expect = 7e-25 Identities = 288/427 (67%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 |||| || |||||||| ||| ||| | || || | | || ||| ||| | || | Sbjct 7476 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 7535 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 ||| | ||||| ||||| || || || || | || || |||| || | || || | Sbjct 7536 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 7595 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 |||||||||||| || | ||| ||||| || ||| | ||| | || Sbjct 7596 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGTTTAGCACAAAACTTCGTCGGCA 7655 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 |||||||| || || || || || || ||||||||||| ||||| ||||||| Sbjct 7656 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 7715 Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGA-GGCTCGCAAGATC 14656 | || || || | | || || |||||||| ||| ||| ||| | |||| ||| Sbjct 7716 AAGACGCAGCTTCTGCTCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 7774 Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715 || | ||| |||||| | | ||||||||||||| ||| ||||| | || |||||| Sbjct 7775 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGC-GCATTGA 7833 Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775 |||||| | || |||||| || | |||||||| | | ||||| | || |||||||| Sbjct 7834 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 7893 Query 14776 TACGGGT 14782 ||| ||| Sbjct 7894 TACTGGT 7900 >seq1 Length=728537 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||| |||||| || |||| ||||| |||||||||||||||||||| || || ||| Sbjct 440981 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 440922 Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| | || | ||| | |||||||| ||||||||||| || || |||||| || || Sbjct 440921 -GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGA 440863 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| |||||||||||| || |||||| Sbjct 440862 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 440823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562903506240