Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq479 140 4e-28
seq9 129 7e-25
seq1 114 2e-20
>seq479
Length=110724
Score = 140 bits (154), Expect = 4e-28
Identities = 707/1118 (63%), Gaps = 29/1118 (3%)
Strand=Plus/Minus
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|| ||||| || ||||| || |||| || ||||| |||||||| | |||| |||
Sbjct 14925 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14866
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 14865 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14806
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 14805 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14746
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| |||||| | || | || || ||||| ||||| || | | |||||||||| ||
Sbjct 14745 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14686
Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619
|| || |||||| || | |||| | || || |||| |||| | || ||
Sbjct 14685 TACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14629
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679
||||| || ||| | | || ||| |||| ||| | ||||| ||| | || ||||
Sbjct 14628 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14569
Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | ||||| || | |||| ||||| | || |||||||||||||| || ||
Sbjct 14568 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14509
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
| ||| | ||| ||||| | ||||| | | || || || || ||||||
Sbjct 14508 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14449
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATGCGAC 75858
||||| || |||||| || || | ||| ||||| |||| || | | ||
Sbjct 14448 GGTGAAGAATTTGAAAAGCTTTA-TGAGAGTTACGAGAGGCAGGGCAGGGGAAGGAAAAC 14390
Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917
| | |||| | || | ||||| || || ||| | | || || |||||||| |
Sbjct 14389 TATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 14331
Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977
| || || |||||||||||| ||| ||| ||||||||| | | || || |
Sbjct 14330 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 14271
Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037
|||| | || || || || ||||| | ||||| | | ||||| ||||
Sbjct 14270 TCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTG 14211
Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG 76097
| || ||| | || || | || ||||| | || | || |||| | ||
Sbjct 14210 TCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTATG 14151
Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157
| | |||| || || || || || ||| ||||||| || || || || || ||
Sbjct 14150 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 14091
Query 76158 ACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214
| | || | ||||| || |||| || || || || || ||||| || |||||
Sbjct 14090 CCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGACCTG 14034
Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269
||||| | ||||| || ||||| || || | ||| || | || |||| ||
Sbjct 14033 TTGGTCTTGGTGTCCAGGGTCTTGCCGACG-----CTTTCATGGCCCTTCGCATGCCGTT 13979
Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329
|| || | ||| || | ||| | ||| | ||||| || || || || ||||| |
Sbjct 13978 CGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGC 13919
Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389
|| |||||| || ||| | || || | ||| ||||||| | | || |||||
Sbjct 13918 GCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTC 13859
Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427
|||| || | || | ||||||| || |||||||
Sbjct 13858 TCCCATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 13821
>seq9
Length=10661
Score = 129 bits (142), Expect = 7e-25
Identities = 288/427 (67%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417
|||| || |||||||| ||| ||| | || || | | || ||| ||| | || |
Sbjct 7476 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 7535
Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477
||| | ||||| ||||| || || || || | || || |||| || | || || |
Sbjct 7536 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 7595
Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537
|||||||||||| || | ||| ||||| || ||| | ||| | ||
Sbjct 7596 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGTTTAGCACAAAACTTCGTCGGCA 7655
Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597
|||||||| || || || || || || ||||||||||| ||||| |||||||
Sbjct 7656 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 7715
Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGA-GGCTCGCAAGATC 14656
| || || || | | || || |||||||| ||| ||| ||| | |||| |||
Sbjct 7716 AAGACGCAGCTTCTGCTCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 7774
Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715
|| | ||| |||||| | | ||||||||||||| ||| ||||| | || ||||||
Sbjct 7775 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGC-GCATTGA 7833
Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775
|||||| | || |||||| || | |||||||| | | ||||| | || ||||||||
Sbjct 7834 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 7893
Query 14776 TACGGGT 14782
||| |||
Sbjct 7894 TACTGGT 7900
>seq1
Length=728537
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||| |||||| || |||| ||||| |||||||||||||||||||| || || |||
Sbjct 440981 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 440922
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
||| | || | ||| | |||||||| ||||||||||| || || |||||| || ||
Sbjct 440921 -GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGA 440863
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| |||||||||||| || ||||||
Sbjct 440862 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 440823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596562903506240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |