Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 127 6e-24 seq479 113 1e-19 seq1 102 2e-16 seq13 93.3 1e-13 >seq9 Length=10661 Score = 127 bits (140), Expect = 6e-24 Identities = 262/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048 ||||||||| ||||| | || |||||||| | | ||| || | | || || |||| Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841 Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106 | |||| |||| | |||||| || ||||| ||| | |||| ||||| | Sbjct 7840 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 7786 Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162 | || || || || ||||| ||| |||| || |||||| ||||| | | || Sbjct 7785 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGAGCAGA 7727 Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 |||||||| || ||||| |||||| || |||||||| ||||| || | | ||||| Sbjct 7726 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 7667 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||||||||| ||| ||||| ||||| || | ||| ||||| | | | |||||||| Sbjct 7666 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGC 7607 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||| || |||||| | | | || ||||| || || | || ||||| || || Sbjct 7606 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 7547 Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366 ||| | ||| ||| |||||| Sbjct 7546 TTCTTTGGTGAGGTTTCGCTTGAA 7523 >seq479 Length=110724 Score = 113 bits (124), Expect = 1e-19 Identities = 423/661 (64%), Gaps = 7/661 (1%) Strand=Plus/Plus Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723 |||||||| || | | ||| ||||| || || ||| |||||||||||| ||| Sbjct 14267 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 14326 Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783 || ||| || ||||| | || || || || || | ||| || | |||| || Sbjct 14327 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 14386 Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843 || || | ||||| | | ||| || || ||| ||| || | || ||| Sbjct 14387 ATAGTTTTCCTTCCCCTGCCCTGCCTCTCGTAACTCTCATAAAGCTTTTCAAATTCTTCA 14446 Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903 |||||| || ||||||||||||| |||| || | || | |||| || Sbjct 14447 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 14504 Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961 | |||| ||||||| ||| || | ||| ||| | || |||||||| || | | Sbjct 14505 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 14564 Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021 | | |||||| | || || ||||||| || || | ||| || | ||||| | Sbjct 14565 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 14624 Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078 | ||||| ||||| || || || |||| | |||| ||||| ||||| || | Sbjct 14625 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 14684 Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138 | ||||| || | | | | | ||||||||||| || || ||||| ||||||| Sbjct 14685 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 14744 Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 | ||| ||| | || || | || | ||| ||||| || || ||||||||||| | Sbjct 14745 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 14804 Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258 || || || ||||| || ||| | ||||| | | ||||| ||||| || |||| Sbjct 14805 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 14864 Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | | ||| | | || |||| || | ||| ||||| || || || |||||||| | Sbjct 14865 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 14924 Query 156319 G 156319 | Sbjct 14925 G 14925 >seq1 Length=728537 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||| || ||||||| ||| | | Sbjct 441043 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 440984 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||| | || ||| |||||||||||| || ||||| || || ||| |||| | | Sbjct 440983 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 440924 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || |||||||| ||||| ||| | | ||||| || || ||||||| Sbjct 440923 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACG 440864 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | ||||||| || |||||||| |||||| Sbjct 440863 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 440823 >seq13 Length=428818 Score = 93.3 bits (102), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| || || ||||||| ||| | | | ||| ||||| |||| || | | Sbjct 392556 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 392615 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 || ||||||||||| || || || ||||| |||||||| | ||| | ||||||| Sbjct 392616 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 392675 Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||||| ||||| | | |||| | ||| | || | ||| | | ||| | ||||| Sbjct 392676 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 392733 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770 |||||| || | |||||| || | ||||| ||| | |||||||| | | || || Sbjct 392734 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 392790 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | | ||| | | |||||| ||||| |||||| ||| || |||| Sbjct 392791 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 392837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800665818626