Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq479 116 5e-20
seq190 93.3 5e-13
seq1 93.3 5e-13
>seq479
Length=110724
Score = 116 bits (128), Expect = 5e-20
Identities = 177/252 (70%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| || ||||| || || ||| ||| | | |||||||| || | || |||||||||
Sbjct 14675 TGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAG 14734
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
| || ||||| || || | ||||| ||| || || | ||||| | || ||
Sbjct 14735 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 14794
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || ||||| | ||||||||| | || || ||||| || |||||||| || ||
Sbjct 14795 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 14854
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||||| |||||||| ||||||| ||||| || || |||| || | | || |||
Sbjct 14855 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 14914
Query 1630306 GCGTTGAAGAGC 1630317
|||||||| |||
Sbjct 14915 GCGTTGAAAAGC 14926
>seq190
Length=230529
Score = 93.3 bits (102), Expect = 5e-13
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315
||||| || || ||| ||||| | || || || | || ||||||| |||| ||||
Sbjct 203659 CAGTCTGGTACCGAGCACGGCGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACAAC 203600
Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375
||||| || || ||||| |||| | | || || || || || |||
Sbjct 203599 AAGGACCAACGACCTCATGACTACGCCGAGACTGACCTTTACCCCCGACCTTCCCATGCC 203540
Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435
|||||||||||| | ||||||||||| ||||||| || || ||||| || || ||||
Sbjct 203539 GACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCTGGCGGTGGTCGTGCGTCC 203480
Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
|| || ||||| || || || || || |||||| | || |||||||
Sbjct 203479 GCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCGGAGAAAT 203431
>seq1
Length=728537
Score = 93.3 bits (102), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
|||||||||||||| |||||| | ||| ||||||| |||||| | || |||||||
Sbjct 440502 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 440561
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
| || | ||| ||| || | | | || || |||||||| |||||||| ||
Sbjct 440562 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 440621
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872
||| ||||||||||| ||||||||| ||||| ||
Sbjct 440622 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 440657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107065505914666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |