Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq479 116 5e-20 seq190 93.3 5e-13 seq1 93.3 5e-13 >seq479 Length=110724 Score = 116 bits (128), Expect = 5e-20 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || ||||| || || ||| ||| | | |||||||| || | || ||||||||| Sbjct 14675 TGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAG 14734 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | ||||| ||| || || | ||||| | || || Sbjct 14735 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 14794 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| || |||||||| || || Sbjct 14795 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 14854 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| ||||||| ||||| || || |||| || | | || ||| Sbjct 14855 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 14914 Query 1630306 GCGTTGAAGAGC 1630317 |||||||| ||| Sbjct 14915 GCGTTGAAAAGC 14926 >seq190 Length=230529 Score = 93.3 bits (102), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315 ||||| || || ||| ||||| | || || || | || ||||||| |||| |||| Sbjct 203659 CAGTCTGGTACCGAGCACGGCGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACAAC 203600 Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375 ||||| || || ||||| |||| | | || || || || || ||| Sbjct 203599 AAGGACCAACGACCTCATGACTACGCCGAGACTGACCTTTACCCCCGACCTTCCCATGCC 203540 Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435 |||||||||||| | ||||||||||| ||||||| || || ||||| || || |||| Sbjct 203539 GACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCTGGCGGTGGTCGTGCGTCC 203480 Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 || || ||||| || || || || || |||||| | || ||||||| Sbjct 203479 GCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCGGAGAAAT 203431 >seq1 Length=728537 Score = 93.3 bits (102), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||||||||||| |||||| | ||| ||||||| |||||| | || ||||||| Sbjct 440502 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 440561 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || | | | || || |||||||| |||||||| || Sbjct 440562 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 440621 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 ||| ||||||||||| ||||||||| ||||| || Sbjct 440622 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 440657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107065505914666