Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq479 87.8 2e-12 >seq1 Length=728537 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || ||||| || || ||||| || | | Sbjct 455548 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 455607 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||||| || ||||| ||||| || ||||| ||||| Sbjct 455608 GACACTATAGACAACGTTAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 455666 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||| ||||| || ||||| || |||||| | | | || || || || Sbjct 455667 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 455726 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || ||| | || | || |||| || || Sbjct 455727 CATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 455774 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || ||||| ||||| ||||| || ||||| ||| | | Sbjct 455041 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 455100 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || || || || || Sbjct 455101 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 455160 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || || || || || ||| | || ||||| || Sbjct 455161 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 455220 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||||| || || || || | || ||||| Sbjct 455221 ATTCAAAAGGAGTCCACTCTCCATCTCGTCTTGCG 455255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | || || || |||||||| ||||| || || ||||| || | Sbjct 454759 ACCATGCAAATTTTCGTGAAGACCCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 454818 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||||||||| || || || ||||| || Sbjct 454819 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGAC 454878 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||||| ||||||||||| || || ||||| || ||| Sbjct 454879 CAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 454917 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || ||||| || || || || ||||| ||| | | ||| || | || | || || Sbjct 455850 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 455909 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||||||||| || || || || || ||||| ||||| | ||||| ||||| Sbjct 455910 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 455969 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| || || ||| ||| | || ||||| || || |||||||| || || || Sbjct 455970 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTC 456029 Query 24905 CACTTGGTGTTGCG 24918 || | || ||||| Sbjct 456030 CATCTCGTCTTGCG 456043 >seq479 Length=110724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/279 (68%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||| | || || || | || ||| ||||||||| |||| | ||| | | || Sbjct 14413 CTCGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCA 14472 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || | | |||||||| || | ||| | || | | | ||| ||| ||||||| ||||| Sbjct 14473 CTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATC 14532 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCT--TCCGAACCCATGTTA 139479 | ||||| | ||| | | | ||| || || || || || ||| ||| ||| | Sbjct 14533 GGAGATCCAGAGGGCGTAGAAAAGATCACGAGC--TCGTACCTCCTCCTTACC-ATGGTT 14589 Query 139480 CGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 | | | | || || ||| ||||| || ||||||||||| || || ||||||||||| | Sbjct 14590 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 14649 Query 139539 TGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCG 139574 || || || ||| ||||||||||| |||| ||| Sbjct 14650 GGCACCAGGACGCTTGTTACCACCTTGATCAACGTATCG 14688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892549899440