Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 >seq1 Length=728537 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | ||||| || || || ||||| ||||| || || | | Sbjct 455774 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 455715 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || |||||||| |||||| | ||||||| ||||||||| || ||| Sbjct 455714 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 455655 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || ||| || | | | ||| |||| ||||||||| || || Sbjct 455654 ATACCTTCCTTGTCCTG-AATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGAC 455596 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| ||||| || || || || || || ||||| |||||||| Sbjct 455595 TTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||||| |||||| || || || |||||||| || Sbjct 454917 ATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTT 454858 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||||| ||| || ||||||||||| || Sbjct 454857 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGAT 454798 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || | ||| || || || || ||||| Sbjct 454797 AGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214984016618