Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq590 93.3 3e-13 seq13 93.3 3e-13 >seq590 Length=83274 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 282668 || || || || ||||||| ||||| || | ||||| || || || ||||| | | Sbjct 83071 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAACTTAC 83014 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 || || || || || ||||| |||| ||| ||| ||||| | |||| |||||| | Sbjct 83013 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGATTCT 82954 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 | || ||||| || || || |||| | || | || | |||||||||||| ||||| | Sbjct 82953 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 82894 Query 282789 GATTACCTTGATCATTCGC 282807 |||| || ||||| || || Sbjct 82893 GATTGCCCTGATCGTTGGC 82875 >seq13 Length=428818 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || ||| Sbjct 392697 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 392638 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||| ||||||| | | ||||| | | || || | || | Sbjct 392637 GCTGAGACTGGTTATATCCAAAGAAGATTGGTCAAAGCGATGGAGGACTTGAAGGTTGCT 392578 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||||||||| ||||||||| Sbjct 392577 TATGATGGTACTGTGAGAAAT 392557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740586311994948