Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 136 8e-27 >seq1 Length=728537 Score = 136 bits (150), Expect = 8e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| |||| | ||||| || | || || ||||| || || || ||||| |||| Sbjct 456060 ACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAAT 456001 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | || ||| ||| || ||||| ||||||||||| || ||||| |||| ||| ||||| | Sbjct 456000 CGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAG 455941 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || || ||||| ||||| ||||| || || ||||| || || ||||| | | || Sbjct 455940 GGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATT 455881 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGT 82786 | ||||| | ||| || ||||| || || Sbjct 455880 CGACTTCAAGAGTGATTGTCTTACCCGT 455853 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || || || ||| | || || ||||| || || || ||||||||||| | || ||| || Sbjct 454937 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 454878 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || ||||| || || ||||| ||||| ||||| || || ||||| || || || || | Sbjct 454877 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 454818 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| | ||| || ||||| || || | ||||| || || || ||||| Sbjct 454817 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981815903464422