Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 8e-17
seq512 96.9 3e-15
seq888 86.0 6e-12
>seq1
Length=728537
Score = 102 bits (112), Expect = 8e-17
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|||||||| || || |||||||||||| | || || || || || || ||||| |
Sbjct 455237 GTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 455180
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | ||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 455179 CGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCT 455120
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || || | | || || || | ||| | |||||||||||| || |
Sbjct 455119 TGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 455060
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| ||||| || |||||
Sbjct 455059 TTTTGACGAAGATTTGCAT 455041
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| || ||||| || ||| | || | || || ||||| |||||||| || ||||||
Sbjct 455423 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 455364
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | |||| ||||| | || || || || | ||||
Sbjct 455363 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 455304
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| |||||||| ||||||||||||||
Sbjct 455303 GTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269
>seq512
Length=93957
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| || ||| | || | ||||||||||| || ||||| || |||||
Sbjct 79143 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 79202
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| || ||| || |||| |||||
Sbjct 79203 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 79262
Query 133625 GGTTTTGCCGGTCAGA 133640
||| || ||||| |||
Sbjct 79263 GGTCTTTCCGGTAAGA 79278
>seq888
Length=502515
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535
||||||||||| ||||||||||| |||| || ||||||||| ||||| || ||| ||
Sbjct 143162 GGCTTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGTACCTCTGCTGGCCCCCAT 143103
Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595
| ||||||| || ||||||| || |||| || | ||| | ||||| ||||||
Sbjct 143102 TACAACCCCTTTAAAAAGCACCACGGTGCTCCCACCGACTCCGAGAGGCACGTTGGTGAC 143043
Query 116596 CTGGG 116600
|| ||
Sbjct 143042 CTCGG 143038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483415373601520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |