Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq512 96.9 3e-15 seq888 86.0 6e-12 >seq1 Length=728537 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| || || |||||||||||| | || || || || || || ||||| | Sbjct 455237 GTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 455180 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || ||||| || |||||||| |||||| || Sbjct 455179 CGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCT 455120 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || || | | || || || | ||| | |||||||||||| || | Sbjct 455119 TGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 455060 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| Sbjct 455059 TTTTGACGAAGATTTGCAT 455041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || ||| | || | || || ||||| |||||||| || |||||| Sbjct 455423 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 455364 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | || || || || | |||| Sbjct 455363 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 455304 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| |||||||||||||| Sbjct 455303 GTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 >seq512 Length=93957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | ||||||||||| || ||||| || ||||| Sbjct 79143 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 79202 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || |||| ||||| Sbjct 79203 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 79262 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 79263 GGTCTTTCCGGTAAGA 79278 >seq888 Length=502515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 ||||||||||| ||||||||||| |||| || ||||||||| ||||| || ||| || Sbjct 143162 GGCTTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGTACCTCTGCTGGCCCCCAT 143103 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 | ||||||| || ||||||| || |||| || | ||| | ||||| |||||| Sbjct 143102 TACAACCCCTTTAAAAAGCACCACGGTGCTCCCACCGACTCCGAGAGGCACGTTGGTGAC 143043 Query 116596 CTGGG 116600 || || Sbjct 143042 CTCGG 143038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415373601520