Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 1e-19
>seq1
Length=728537
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | || | || || || ||| ||||| |||||||| |||||
Sbjct 455775 ACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 455716
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | |||||| || ||||||||||| || |||||||| | ||
Sbjct 455715 AAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGG 455656
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| ||| ||| | | ||| | ||| | ||||| || || |
Sbjct 455655 AATACCTTCCTTGTCCTGAATCTTC-GCCTTAACGTTGTCTATAGTGTCAGACGACTCGA 455597
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || || || || |||||||||||||||
Sbjct 455596 CTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 455547
Score = 107 bits (118), Expect = 1e-18
Identities = 166/233 (71%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| |||||| ||| ||||| || |||||||||||
Sbjct 455268 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 455209
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || |||| || | ||| |||||||| |||||||| |||||||| || | ||
Sbjct 455208 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGG 455149
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||| || ||||| || || | | |||| ||| | ||| || ||| ||
Sbjct 455148 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTATCAGAGCT---TT 455093
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || |||| || || ||||| || || | ||||| || ||||| ||||||
Sbjct 455092 CGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 455040
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| || || | ||| || || ||| ||||| || |||||||||||
Sbjct 456056 ACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGA 455997
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || || | |||||||||||| || || | || |||||||| | ||
Sbjct 455996 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 455937
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| || || | | |||| ||| | ||| ||||| ||||| |
Sbjct 455936 GATACCCTCCTTGTCTTGGATCTT-GGCCTTGACATTGTCGATGGTATCGCTCGATTCGA 455878
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| |||| ||||| || ||||| ||
Sbjct 455877 CTTCAAGAGTGATTGTCTTACCCGT 455853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328700402540160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |