Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 >seq1 Length=728537 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 25211 ATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGAT 25270 ||||| | ||||||||| | | |||||| ||||| | || || || || || Sbjct 455865 ATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAGGCCAAGATCCAAGAC 455924 Query 25271 AAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330 || |||||||| || || ||||||||| ||||||| | || ||| |||||||| |||||| Sbjct 455925 AAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAACAACTTGAAGAT 455984 Query 25331 GATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | ||| | | |||||||||||| ||||| || || ||| | ||| | || || Sbjct 455985 GGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTCCATCTCGTCTT 456040 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | || || | ||||||||| | Sbjct 455041 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 455100 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || || || || || |||||||| || || || ||| Sbjct 455101 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 455160 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || ||| || ||||| ||||| | ||| | | |||||||||| Sbjct 455161 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 455220 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| || ||||| Sbjct 455221 ATTCAAAAGGAGTCCAC 455237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089403815360