Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=728537 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| ||||| || || ||||| ||||||||||| ||||| ||| | Sbjct 455267 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 455208 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || || || || || || |||||||| |||||||| || || || Sbjct 455207 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 455148 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| ||| | || || || ||| || Sbjct 455147 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACT 455088 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 455087 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || |||||||| |||||||||||| || || || || || Sbjct 455756 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 455697 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||| || ||||||||||| || |||||||| || || || ||||| || || ||| Sbjct 455696 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 455637 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| ||||| || || || ||||| || || || Sbjct 455636 ATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTT 455577 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || || || ||||| Sbjct 455576 CCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| || || ||||| ||||| || ||||| || || || || || || || Sbjct 454916 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 454857 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || ||||| ||| | |||||||| || ||||| || ||||| || Sbjct 454856 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATA 454797 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || |||||||| | || || |||||||||||||| ||||| Sbjct 454796 GTCTTACCGGTGAGGGTCTTCACGAAAATTTGCATGGTGTTT 454755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505392726902960