Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq479 174 2e-38 seq9 143 3e-29 seq1 114 2e-20 >seq479 Length=110724 Score = 174 bits (192), Expect = 2e-38 Identities = 714/1120 (64%), Gaps = 33/1120 (3%) Strand=Plus/Plus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| ||||||| | || | || ||||||||| || | | |||||||| Sbjct 13821 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13880 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 13881 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13940 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 13941 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14000 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || || ||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 14001 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 14055 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | || || || || || || Sbjct 14056 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14112 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 14113 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 14172 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 14173 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14232 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 14233 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14289 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 14290 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14349 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCT 111455 | | ||| || || ||||| | || | |||| | | | | ||| |||| Sbjct 14350 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCCTGCCCT 14408 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | |||||| | || || |||||| || ||||| |||||| || || | Sbjct 14409 GCCTCTCGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAG 14468 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || | | ||||| | ||||| ||| | ||| | || || ||||||||||||| Sbjct 14469 GGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAA 14528 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 | || | ||||| |||| | || ||||| | | || |||| || | ||| |||| Sbjct 14529 GATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGT 14588 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | ||| |||| ||| || | | ||| |||||||| ||||||||||||| |||| Sbjct 14589 TCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGA 14648 Query 111696 TAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 | || ||||| ||| |||||| || || || |||||||||| | Sbjct 14649 AGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAG 14705 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809 | || ||||| ||||| || || | || | |||||| || || ||| || | Sbjct 14706 CTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT 14765 Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 | || | | || || ||||| | |||||||| || || ||| ||||| || |||| Sbjct 14766 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 14825 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 | | | ||||| | |||||||| | || ||||| ||||| |||| | ||||||| Sbjct 14826 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 14885 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 | ||||| || |||| || ||||| || ||||| || Sbjct 14886 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925 >seq9 Length=10661 Score = 143 bits (158), Expect = 3e-29 Identities = 296/432 (69%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | |||||||| | || |||||| || | Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841 Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 |||||||||||| || | ||||| ||| ||||||||||||| | | |||||| || Sbjct 7840 ATCTGGTTCAATGC-GCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 7782 Query 181744 GATCAAAGATCTTGCGAGCC-TCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802 | | ||||| |||| | ||| ||| ||| |||||||||||||| | | || Sbjct 7781 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 7723 Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 |||||||||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 7722 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7663 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918 ||||| || ||| | || || || ||||| | ||| | | | Sbjct 7662 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGGC 7607 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977 |||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| | Sbjct 7606 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 7548 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| | ||||||| | ||| ||| || | | || || | ||| ||| |||| Sbjct 7547 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 7488 Query 182038 GACCATCCGCCA 182049 |||| || |||| Sbjct 7487 GACCGTCGGCCA 7476 >seq1 Length=728537 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| ||||| || || || || || |||||| ||||| Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 440941 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||||||| ||||| |||| || || ||| |||| Sbjct 440942 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 440981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024950340800