Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq479 174 2e-38
seq9 143 3e-29
seq1 114 2e-20
>seq479
Length=110724
Score = 174 bits (192), Expect = 2e-38
Identities = 714/1120 (64%), Gaps = 33/1120 (3%)
Strand=Plus/Plus
Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927
|||||||||| ||||||| | || | || ||||||||| || | | ||||||||
Sbjct 13821 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13880
Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987
||| | || || | ||| || |||||| || | ||||| || || || || |
Sbjct 13881 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13940
Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 13941 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14000
Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102
|| | || || ||||| || ||||| | ||||| ||||| || ||||| || ||
Sbjct 14001 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 14055
Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 14056 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 14112
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 14113 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 14172
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 14173 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 14232
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 14233 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 14289
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| ||| |||| |||||||||||| ||||| || || ||||| || ||
Sbjct 14290 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 14349
Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCT 111455
| | ||| || || ||||| | || | |||| | | | | ||| ||||
Sbjct 14350 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCCTGCCCT 14408
Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515
| |||||| | || || |||||| || ||||| |||||| || || |
Sbjct 14409 GCCTCTCGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAG 14468
Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575
| || | | ||||| | ||||| ||| | ||| | || || |||||||||||||
Sbjct 14469 GGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAA 14528
Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635
| || | ||||| |||| | || ||||| | | || |||| || | ||| ||||
Sbjct 14529 GATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGT 14588
Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695
| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||||
Sbjct 14589 TCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGA 14648
Query 111696 TAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749
| || ||||| ||| |||||| || || || |||||||||| |
Sbjct 14649 AGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAG 14705
Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809
| || ||||| ||||| || || | || | |||||| || || ||| || |
Sbjct 14706 CTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCT 14765
Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869
| || | | || || ||||| | |||||||| || || ||| ||||| || ||||
Sbjct 14766 TCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCAC 14825
Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929
| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||||
Sbjct 14826 AGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGC 14885
Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969
| ||||| || |||| || ||||| || ||||| ||
Sbjct 14886 ATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925
>seq9
Length=10661
Score = 143 bits (158), Expect = 3e-29
Identities = 296/432 (69%), Gaps = 14/432 (3%)
Strand=Plus/Minus
Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684
||| ||||||||||| || | ||||| | | |||||||| | || |||||| || |
Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841
Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
|||||||||||| || | ||||| ||| ||||||||||||| | | |||||| ||
Sbjct 7840 ATCTGGTTCAATGC-GCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 7782
Query 181744 GATCAAAGATCTTGCGAGCC-TCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802
| | ||||| |||| | ||| ||| ||| |||||||||||||| | | ||
Sbjct 7781 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 7723
Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862
|||||||||||||| ||||| ||||||||||| || || || || || || |||
Sbjct 7722 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7663
Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918
||||| || ||| | || || || ||||| | ||| | | |
Sbjct 7662 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGGC 7607
Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977
|||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| |
Sbjct 7606 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 7548
Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037
|||| | ||||||| | ||| ||| || | | || || | ||| ||| ||||
Sbjct 7547 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 7488
Query 182038 GACCATCCGCCA 182049
|||| || ||||
Sbjct 7487 GACCGTCGGCCA 7476
>seq1
Length=728537
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| ||||| || || || || || |||||| |||||
Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776
||||||||||| |||||||| | ||| | || | ||| ||| || || ||||||||||
Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 440941
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|||||||||| ||||| |||| || || ||| ||||
Sbjct 440942 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 440981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628024950340800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |