Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq479 167 3e-36
seq1 127 3e-24
>seq479
Length=110724
Score = 167 bits (184), Expect = 3e-36
Identities = 713/1116 (64%), Gaps = 27/1116 (2%)
Strand=Plus/Plus
Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402
|||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 13822 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13881
Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462
|| |||| || | |||| | |||||| || || ||||| || || || || ||
Sbjct 13882 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13941
Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522
|| | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 13942 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 14001
Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582
| || || ||||| |||||||| || |||| || ||||| | ||| || || || ||
Sbjct 14002 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 14061
Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639
|| ||| ||| ||||| | || | ||| || | | || || || || ||
Sbjct 14062 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14118
Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699
|||||| || || || || ||||||| | | ||| | |||| || | || |
Sbjct 14119 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 14178
Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759
|||||| || | || || |||||||| |||| ||||| | || |||||
Sbjct 14179 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14238
Query 118760 TATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817
|| ||||| || || | ||| || | | | ||||| || | || |||||| || |||
Sbjct 14239 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 14296
Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877
|| | ||| ||||||||||| ||||| || || ||||| ||||| | || |
Sbjct 14297 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 14356
Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCCT 118935
|| || || ||| | | || | ||| | ||| | || | |||| | || |
Sbjct 14357 AGGATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTC-T 14414
Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995
|||| | || || |||||| |||||||| | || | || || || ||
Sbjct 14415 CGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 14474
Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055
| || || | |||| ||| | ||| | || || ||||||||||| || || |
Sbjct 14475 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14534
Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115
||||||||| || |||| ||||| ||| || | || || | || || || |
Sbjct 14535 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14594
Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175
|| || | ||||| | | ||| |||||||| || || || || | |||| | |
Sbjct 14595 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14654
Query 119176 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229
| | |||| |||| | || | || || | || ||||||| | | || |
Sbjct 14655 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 14711
Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 119287
|||| |||||||| || | ||| | ||||| || || || || ||| | || ||
Sbjct 14712 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 14769
Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347
| || || ||| ||||| | ||||||||| || || ||| ||||| || || ||
Sbjct 14770 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 14829
Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407
| ||||| | ||||||| ||||| || |||||| |||| | || | |||||||||
Sbjct 14830 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14889
Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443
|||||||| || | ||| ||||| |||||||| ||
Sbjct 14890 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925
>seq1
Length=728537
Score = 127 bits (140), Expect = 3e-24
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133
||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||
Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 440941
Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167
| |||||||| || || |||| ||| |||||
Sbjct 440942 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 440975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428258064880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |