Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq479 167 3e-36 seq1 127 3e-24 >seq479 Length=110724 Score = 167 bits (184), Expect = 3e-36 Identities = 713/1116 (64%), Gaps = 27/1116 (2%) Strand=Plus/Plus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 13822 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 13881 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || |||| || | |||| | |||||| || || ||||| || || || || || Sbjct 13882 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 13941 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 118522 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 13942 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 14001 Query 118523 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCG 118582 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 14002 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCG 14061 Query 118583 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || ||| ||| ||||| | || | ||| || | | || || || || || Sbjct 14062 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14118 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 118699 |||||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 14119 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 14178 Query 118700 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 118759 |||||| || | || || |||||||| |||| ||||| | || ||||| Sbjct 14179 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14238 Query 118760 TATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || ||||| || || | ||| || | | | ||||| || | || |||||| || ||| Sbjct 14239 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 14296 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || | ||| ||||||||||| ||||| || || ||||| ||||| | || | Sbjct 14297 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 14356 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCCT 118935 || || || ||| | | || | ||| | ||| | || | |||| | || | Sbjct 14357 AGGATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTC-T 14414 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 |||| | || || |||||| |||||||| | || | || || || || Sbjct 14415 CGTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 14474 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 | || || | |||| ||| | ||| | || || ||||||||||| || || | Sbjct 14475 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14534 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 ||||||||| || |||| ||||| ||| || | || || | || || || | Sbjct 14535 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14594 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 119175 || || | ||||| | | ||| |||||||| || || || || | |||| | | Sbjct 14595 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14654 Query 119176 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 | | |||| |||| | || | || || | || ||||||| | | || | Sbjct 14655 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 14711 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 119287 |||| |||||||| || | ||| | ||||| || || || || ||| | || || Sbjct 14712 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 14769 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 | || || ||| ||||| | ||||||||| || || ||| ||||| || || || Sbjct 14770 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 14829 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407 | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||| Sbjct 14830 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 14889 Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 |||||||| || | ||| ||||| |||||||| || Sbjct 14890 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925 >seq1 Length=728537 Score = 127 bits (140), Expect = 3e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133 ||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||| Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 440941 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 | |||||||| || || |||| ||| ||||| Sbjct 440942 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 440975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428258064880