Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq479 196 6e-45 seq1 161 1e-34 seq9 98.7 1e-15 >seq479 Length=110724 Score = 196 bits (216), Expect = 6e-45 Identities = 806/1255 (64%), Gaps = 37/1255 (3%) Strand=Plus/Minus Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || ||||| || ||||| || ||||||||||||| |||||||| | |||| ||| Sbjct 14925 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14866 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 14865 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14806 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 14805 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 14746 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || |||||| | || | || || ||||| ||||| || | | |||||||||| || Sbjct 14745 ACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 14686 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||||| ||| ||||| || | |||| ||||||||||||| Sbjct 14685 TACGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 14629 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 14628 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14569 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || || Sbjct 14568 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14509 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||||| |||| | ||||| | | || ||||| || |||| | Sbjct 14508 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14449 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868 ||||| || |||||| ||||| | ||||| || | ||| | || || | || Sbjct 14448 GGTGAAGAATTTGAAAAGCTTTATGAGAGTTACGA-GAGGCAGGGCAGGGGAAGGAAAAC 14390 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | ||| | || | | ||| || || ||| || ||||||||||||||||| | Sbjct 14389 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCC 14331 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | ||||| ||||| || || ||| ||| || |||||| | | ||| | Sbjct 14330 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 14271 Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||| ||| || |||||||| |||||| |||| | | | ||||| | Sbjct 14270 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 14214 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103 |||| ||||| || || || | ||||| || | || || | || || | Sbjct 14213 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCGTC 14155 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | |||| || ||||| |||| || ||| || || ||||| ||| || Sbjct 14154 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTA 14095 Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 || | || | || || || |||| || || || || || ||| | || || Sbjct 14094 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 14038 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || ||||||| ||||| |||||||| || || | ||||| |||| | || Sbjct 14037 CCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 13978 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || |||| || || | |||| ||||| | || || ||||| || || ||||| || Sbjct 13977 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCG 13918 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 ||||||||| | || | || |||| |||| | |||||| | | || |||||| Sbjct 13917 CTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 13858 Query 105401 CCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTG---AGACCAAGCTTC 105455 || | || | ||||| | ||||| | || ||||||| ||| ||| | ||| Sbjct 13857 CC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTT- 13801 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 | |||||| || || |||| ||| |||| ||| | | ||| | | | Sbjct 13800 --TGGGACTGGACAGAGCTGAAGGCCAAGATCGCACAGAACGGTGTGAGGAACTCTTTGC 13743 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || | || || ||||| || ||||| || | |||||||||||| || ||||| Sbjct 13742 TCGTCGCCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGGTTGGAACGAATG 13688 >seq1 Length=728537 Score = 161 bits (178), Expect = 1e-34 Identities = 214/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730 ||||| |||| || |||||||| ||| || ||| | | ||||||| || || | Sbjct 441107 CTCATCGACACCTACATTAAGGACACTGCCC-GACGAAACTTCCTCTTTGACGCTATGGA 441049 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 441048 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 440989 Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 440988 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 440932 Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906 |||||| ||| ||| | || | ||||| |||||||||||||||||||| |||||| || Sbjct 440931 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 440873 Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 440872 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 440824 >seq9 Length=10661 Score = 98.7 bits (108), Expect = 1e-15 Identities = 281/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841 Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 7840 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 7781 Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 7780 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 7722 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 7721 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 7662 Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 7661 TGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCAC 7602 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634 | ||||| || || | ||||| | || | |||| ||| ||| || || || || || Sbjct 7601 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 7543 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 | |||| || | ||| || | | | |||||| || || ||| |||||||| Sbjct 7542 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 7483 Query 168695 TCCGCCA 168701 || |||| Sbjct 7482 TCGGCCA 7476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254252897520