Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq479 163 3e-35 seq512 95.1 1e-14 >seq1 Length=728537 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||| |||||||| |||||||| || ||||| | Sbjct 455548 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 455607 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || |||||||||||||| || |||||||| || ||| Sbjct 455608 GACACTATAGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 455667 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||||||||| ||||| ||||||| |||||| || | ||||| || Sbjct 455668 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 455727 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| || || | ||||| || ||||| Sbjct 455728 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 455774 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || |||||||| || ||||| ||||| || || | Sbjct 455041 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 455100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || || ||||||||||| || || || |||||| Sbjct 455101 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 455160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| || || |||||||| || || | || || || | || || ||| Sbjct 455161 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 455220 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||| ||||| ||||||||||| || ||||| Sbjct 455221 ATTCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGAGGTGG 455267 Score = 143 bits (158), Expect = 3e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || |||||||| |||||||| |||||||||||||| || | Sbjct 455269 ATGCAGATTTTCGTCAAAACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 455328 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||||||||||||||| || ||||| ||||| Sbjct 455329 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 455388 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 || || | || || || || |||||||| ||||||| ||| || Sbjct 455389 CAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAAC 455432 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || |||||||| || || || | |||| ||| | ||| | ||| Sbjct 455850 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 455909 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || ||||||||||| || || || || ||||| || || || || || || Sbjct 455910 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 455969 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || |||| || || || | || || ||| |||||||||| || || || Sbjct 455970 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTC 456029 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||||||||| || ||||| Sbjct 456030 CATCTCGTCTTGCGTCTCCGAGGTGG 456055 Score = 125 bits (138), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 454762 ATGCAAATTTTCGTGAAGACCCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 454821 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 454822 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 454881 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || || | || |||||||||||||| || || |||| Sbjct 454882 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 454918 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| || |||||||| ||||||||||||||||| || | | || |||||| || Sbjct 145809 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 145750 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||| | || ||||||| || ||| | ||||| |||||| ||||| |||| ||| Sbjct 145749 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAG 145690 Query 64846 GGG 64848 ||| Sbjct 145689 GGG 145687 >seq479 Length=110724 Score = 163 bits (180), Expect = 3e-35 Identities = 654/1015 (64%), Gaps = 25/1015 (2%) Strand=Plus/Plus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 ||||||||||||| ||| | ||| |||| || ||||| || || | | || || Sbjct 13820 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 13879 Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658 | || | || ||| || || || ||| || ||| |||||||| || || ||| Sbjct 13880 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 13939 Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718 |||| | || | | | |||| | | |||||||| || || | |||| Sbjct 13940 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 13999 Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCG 80777 || |||| || || ||||| || || | | | || || |||||| |||| || | | Sbjct 14000 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTG 14059 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 | |||||| || | ||| || ||||| ||| || || ||||| |||||| Sbjct 14060 CG-GGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14118 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTG--GTTCCCCTTC-ACAAA 80891 |||| |||| || || || || | ||||| || | |||| || || || Sbjct 14119 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA 14178 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || ||||| || || || ||||| || || || || || |||| | | | |||| Sbjct 14179 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 14238 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | |||||| || || | ||| || || || ||||| |||| || ||||| ||||| Sbjct 14239 CATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 14298 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 || |||| ||| ||||||||||| ||||| ||| ||| |||||| || | || ||| Sbjct 14299 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 14358 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||||||| ||||| || | || |||| || | |||| | | | || Sbjct 14359 GATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTCTCGTA 14418 Query 81132 CTTGGCGT-AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190 | | | |||||| || || | |||||| || || | || | ||||||||| Sbjct 14419 ACTCTCATAAAGCTT-TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGG 14477 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250 || ||||| || ||| || ||| || ||| |||||||||| || | || Sbjct 14478 CGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGA 14537 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCG 81308 ||||||||||| ||| || || || ||| || ||||||| | ||| ||||| | Sbjct 14538 TCCAGAGGGCGTAGAAAAGATCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCCT 14595 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC- 81366 || || | ||||| | | || || ||||| ||||| ||||| | ||||| | || Sbjct 14596 TAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC 14655 Query 81367 ----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422 | |||| | ||||| || | ||||| || || || |||| | | || | Sbjct 14656 AGGACGCTTGTTA---CCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAG 14712 Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482 |||||| ||||| || | || | ||| || ||||| | || || ||||| || || Sbjct 14713 CATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACG 14772 Query 81483 CACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | ||| ||| || |||||| || ||||| | ||| || ||||||||||| Sbjct 14773 GATATTG-TGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACA 14826 >seq512 Length=93957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || || || ||||| ||||| || | ||| | ||| | ||| Sbjct 79277 CTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAG 79218 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| || || || ||||||||||| | || || || || Sbjct 79217 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGA 79158 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | | ||||| | ||||| Sbjct 79157 AAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 79123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303998265760