Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq334 89.7 5e-13 >seq334 Length=594113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 232/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||| ||||| || | | ||||| | | ||||| |||||| Sbjct 342537 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 342596 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || |||||| |||||| | ||| || ||||||||| | Sbjct 342597 TCGTTTCTGGCTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 342656 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397 | |||| ||| |||||||| ||| ||| || ||| | | ||| | || | Sbjct 342657 GTAACGGAAGCAAAGAATTTCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 342713 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | |||| || || ||||||||||| |||||||| ||||| || ||||| | || Sbjct 342714 ATCTGGGACCTGTGTACGGGTTCCAATGGAGACATTTTGGTGCCGAGTACACTGATGCCG 342773 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | |||||| ||| | |||| ||||| ||||| || ||||||||| | ||| Sbjct 342774 ACGGAGACTATAAGGGCAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 342833 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || || |||||| |||| | | | || |||||||| |||| || Sbjct 342834 ACAATCCAACTGACAGGCGGATTATCTTATCAGCTTGGAACCCAAAGGGTC 342884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 232/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836 || |||| |||||||| || | | | |||| |||||| || || ||| | || Sbjct 342884 GACCCTTTGGGTTCCAAGCTGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 342825 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 ||||||| || ||||| ||||| |||| | ||| |||||| | ||| | Sbjct 342824 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGCCCTTATAGTCTCCGTCGGCATCAG 342765 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955 ||||| || ||||| |||||||| ||||||||||| || || |||| || || | || Sbjct 342764 TGTACTCGGCACCAAAATGTCTCCATTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 342705 Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 | | | ||| || ||| ||| |||||||| ||| |||| | | ||||||| Sbjct 342704 TTCTG---TGGCCGAGCCCGACCTTCTCCAGAAATTCTTTGCTTCCGTTACCATCCCAGA 342648 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 || || ||| | |||||| |||||| || || || |||||||||| | Sbjct 342647 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCACAAAA 342588 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| | | ||||| | | || ||||| |||||||| || |||| Sbjct 342587 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 342537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257368254560