Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq334 89.7 5e-13
>seq334
Length=594113
Score = 89.7 bits (98), Expect = 5e-13
Identities = 232/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280
|||| || |||||||| ||||| || | | ||||| | | ||||| ||||||
Sbjct 342537 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 342596
Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340
|||| || || || |||||| |||||| | ||| || ||||||||| |
Sbjct 342597 TCGTTTCTGGCTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 342656
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397
| |||| ||| |||||||| ||| ||| || ||| | | ||| | || |
Sbjct 342657 GTAACGGAAGCAAAGAATTTCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 342713
Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457
| |||| || || ||||||||||| |||||||| ||||| || ||||| | ||
Sbjct 342714 ATCTGGGACCTGTGTACGGGTTCCAATGGAGACATTTTGGTGCCGAGTACACTGATGCCG 342773
Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517
| | |||||| ||| | |||| ||||| ||||| || ||||||||| | |||
Sbjct 342774 ACGGAGACTATAAGGGCAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 342833
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568
|| || |||||| |||| | | | || |||||||| |||| ||
Sbjct 342834 ACAATCCAACTGACAGGCGGATTATCTTATCAGCTTGGAACCCAAAGGGTC 342884
Score = 89.7 bits (98), Expect = 5e-13
Identities = 232/351 (66%), Gaps = 6/351 (2%)
Strand=Plus/Minus
Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836
|| |||| |||||||| || | | | |||| |||||| || || ||| | ||
Sbjct 342884 GACCCTTTGGGTTCCAAGCTGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 342825
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
||||||| || ||||| ||||| |||| | ||| |||||| | ||| |
Sbjct 342824 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGCCCTTATAGTCTCCGTCGGCATCAG 342765
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955
||||| || ||||| |||||||| ||||||||||| || || |||| || || | ||
Sbjct 342764 TGTACTCGGCACCAAAATGTCTCCATTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 342705
Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
| | | ||| || ||| ||| |||||||| ||| |||| | | |||||||
Sbjct 342704 TTCTG---TGGCCGAGCCCGACCTTCTCCAGAAATTCTTTGCTTCCGTTACCATCCCAGA 342648
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
|| || ||| | |||||| |||||| || || || |||||||||| |
Sbjct 342647 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCACAAAA 342588
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124
|||| | | ||||| | | || ||||| |||||||| || ||||
Sbjct 342587 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 342537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448257368254560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |