Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 3e-33
seq512 123 6e-23
>seq1
Length=728537
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || ||||| ||||||||||| || || | ||| || | |||||
Sbjct 455759 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 455700
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || || || || | ||||| || |||||||||| ||||||||||||
Sbjct 455699 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 455640
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| || || |||||||| || || || |||||||| |||
Sbjct 455639 TGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 455580
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | |||||| ||||| | ||||||
Sbjct 455579 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548
Score = 145 bits (160), Expect = 2e-29
Identities = 127/158 (80%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || |||
Sbjct 455426 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 455367
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||| ||||| || || || || |||||||||||| ||||||||| ||||||
Sbjct 455366 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 455307
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || ||||| || || || | ||||||
Sbjct 455306 ATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || ||||||||||| ||||| || || ||||| | ||| || | || |||||
Sbjct 455250 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCGTCTTC 455191
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| ||||| || ||||| || | || || |||||||| || | || |||||||| ||
Sbjct 455190 AAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 455131
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
|||||| || || || |||||||| ||||||||||| || || || || || || ||
Sbjct 455130 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 455071
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || || | |||||
Sbjct 455070 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041
Score = 125 bits (138), Expect = 2e-23
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
|| ||||| |||||||| |||||||| || || ||||| | ||||| |||||||||||
Sbjct 454928 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 454869
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| || |||||||| |||||||| || || || ||||||||||| || || ||
Sbjct 454868 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 454809
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || ||||| ||||| || || | |||||
Sbjct 454808 TCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762
>seq512
Length=93957
Score = 123 bits (136), Expect = 6e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||||||||| || || || |||||||| || |||||||| | || || |||
Sbjct 79123 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 79182
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || || || ||||||||||| |||
Sbjct 79183 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 79242
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| |||||||| ||||| |||||||| || |||
Sbjct 79243 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 79278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159138663231770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |