Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 158 3e-33 seq512 123 6e-23 >seq1 Length=728537 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| ||||||||||| || || | ||| || | ||||| Sbjct 455759 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 455700 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | ||||| || |||||||||| |||||||||||| Sbjct 455699 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 455640 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || |||||||| || || || |||||||| ||| Sbjct 455639 TGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 455580 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| ||||| | |||||| Sbjct 455579 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 145 bits (160), Expect = 2e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || ||| Sbjct 455426 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 455367 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || || |||||||||||| ||||||||| |||||| Sbjct 455366 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 455307 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || ||||| || || || | |||||| Sbjct 455306 ATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||||||||| ||||| || || ||||| | ||| || | || ||||| Sbjct 455250 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCGTCTTC 455191 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || ||||| || | || || |||||||| || | || |||||||| || Sbjct 455190 AAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 455131 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || |||||||| ||||||||||| || || || || || || || Sbjct 455130 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 455071 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || | ||||| Sbjct 455070 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| |||||||| |||||||| || || ||||| | ||||| ||||||||||| Sbjct 454928 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 454869 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || |||||||| |||||||| || || || ||||||||||| || || || Sbjct 454868 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 454809 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||| ||||| || || | ||||| Sbjct 454808 TCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 >seq512 Length=93957 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||||||||| || || || |||||||| || |||||||| | || || ||| Sbjct 79123 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 79182 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || || || ||||||||||| ||| Sbjct 79183 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 79242 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||| ||||| |||||||| || ||| Sbjct 79243 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 79278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138663231770