Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq334 138 8e-28 >seq334 Length=594113 Score = 138 bits (152), Expect = 8e-28 Identities = 241/346 (70%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 342879 TTTGGGTTCCAAGCTGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 342820 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG-TCCGTGTA 27500 | | ||||||| || || || || | ||| |||||| || || || ||||| Sbjct 342819 ATTACCCTTTGCAGTTGGTCGACTCCTTTGCCCTTATAGTCT-CCGTCGGCATCAGTGTA 342761 Query 27501 CTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 27560 ||| || || ||||| |||||||||||||||||||| |||||||| || || || || Sbjct 342760 CTCGGCACCAAAATGTCTCCATTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 342701 Query 27561 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 ||| ||| || ||| |||| ||| ||| || ||||| | ||||||||| ||| Sbjct 342700 GTGGCCGAGCCCGACCTTCTCCAGAAATTCTTTGCTTCCGTTACCATCCCAGATCCCTAC 342641 Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 342640 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCACAAAAGCTCGGC 342581 Query 27681 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 342580 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 342537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503155974638