Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 3e-20
>seq1
Length=728537
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| ||||| |||||||| |||||||||||||| |||| | ||| | |||||
Sbjct 455760 GAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 455701
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || || || | | ||||| || | | || |||||||| ||
Sbjct 455700 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 455641
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | |||| |||| || ||| ||||||||||| |||||
Sbjct 455640 CTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGT 455581
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | |||||| || |||| ||||||
Sbjct 455580 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548
Score = 111 bits (122), Expect = 4e-19
Identities = 141/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| ||||| || |||||||| |||||||| |||||||||| | ||||| ||||||||
Sbjct 456038 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 455979
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| ||| ||||||||||| || | ||||| || | | ||| || ||||| |||||
Sbjct 455978 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 455919
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071
|| || |||||| | || | | | || ||| || ||||||||||| || ||
Sbjct 455918 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 455862
Query 152072 TTTGCCCGTGAGA 152084
|| ||||| |||
Sbjct 455861 CTTACCCGTAAGA 455849
Score = 100 bits (110), Expect = 7e-16
Identities = 129/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986
|||| |||| | ||| || |||||||| || || || || ||||| | | ||||
Sbjct 454939 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 454880
Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046
|||| | | ||| || ||||| ||||| || || |||||| | || | | |||| |
Sbjct 454879 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 454820
Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||| ||||||||||| ||||| || || ||||| ||||||||||| | |||||
Sbjct 454819 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984
||||||| | ||||||| ||||| || || ||||| ||||||||||| | | ||
Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 455389
Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
||||| | | ||| || ||||| || ||||| || |||||| | || | | ||||
Sbjct 455388 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 455329
Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| || || || ||||| || ||||| | ||||||
Sbjct 455328 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153807524570558
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |