Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 >seq1 Length=728537 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| |||||||| |||||||||||||| |||| | ||| | ||||| Sbjct 455760 GAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 455701 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || || || | | ||||| || | | || |||||||| || Sbjct 455700 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 455641 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | |||| |||| || ||| ||||||||||| ||||| Sbjct 455640 CTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGT 455581 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| || |||| |||||| Sbjct 455580 CTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 111 bits (122), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || |||||||| |||||||| |||||||||| | ||||| |||||||| Sbjct 456038 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 455979 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||||| || | | ||| || ||||| ||||| Sbjct 455978 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 455919 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || |||||| | || | | | || ||| || ||||||||||| || || Sbjct 455918 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 455862 Query 152072 TTTGCCCGTGAGA 152084 || ||||| ||| Sbjct 455861 CTTACCCGTAAGA 455849 Score = 100 bits (110), Expect = 7e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986 |||| |||| | ||| || |||||||| || || || || ||||| | | |||| Sbjct 454939 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 454880 Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046 |||| | | ||| || ||||| ||||| || || |||||| | || | | |||| | Sbjct 454879 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 454820 Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||| ||||||||||| ||||| || || ||||| ||||||||||| | ||||| Sbjct 454819 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 ||||||| | ||||||| ||||| || || ||||| ||||||||||| | | || Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 455389 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| | | ||| || ||||| || ||||| || |||||| | || | | |||| Sbjct 455388 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 455329 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| || || || ||||| || ||||| | |||||| Sbjct 455328 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807524570558