Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 3e-21
>seq1
Length=728537
Score = 116 bits (128), Expect = 3e-21
Identities = 170/235 (72%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | ||| || || || || ||| ||||||||| || ||||||||
Sbjct 455271 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATC 455212
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | || |||| || || ||||| ||||| || ||||| |||||||| ||
Sbjct 455211 GGAAAGAGTTCG-GC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCA 455154
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282
| || | ||| ||||| || ||||| ||| || ||| | ||||| || | |
Sbjct 455153 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGT--CGATGGTATCAGAGC 455096
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | ||||| || || || |||||||| || ||||||||||||||
Sbjct 455095 TTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041
Score = 114 bits (126), Expect = 9e-21
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || |||||||||||||||||| |||| || || | || ||
Sbjct 455756 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 455697
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || || ||||| ||||| || |||||||| | ||| | ||||||||| |||
Sbjct 455696 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 455637
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| || | || ||| |||| ||||| | || || || || | || || |||||
Sbjct 455636 ATCTTC-GCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 455578
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | ||||| || ||||| |||||
Sbjct 455577 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548
Score = 111 bits (122), Expect = 1e-19
Identities = 123/162 (76%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || |||||||| || ||||||||||| || ||||| || | ||| | ||| |||||
Sbjct 454916 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 454857
Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
|| ||||| ||| || ||| | |||||||||| || ||||| || | || |
Sbjct 454856 TCTTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 454799
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342
| ||||| || ||||||||||||||||| ||||||||| |||
Sbjct 454798 TAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCATGGTGT 454757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359986460130066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |