Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=728537 Score = 116 bits (128), Expect = 3e-21 Identities = 170/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | ||| || || || || ||| ||||||||| || |||||||| Sbjct 455271 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATC 455212 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| | || |||| || || ||||| ||||| || ||||| |||||||| || Sbjct 455211 GGAAAGAGTTCG-GC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCA 455154 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282 | || | ||| ||||| || ||||| ||| || ||| | ||||| || | | Sbjct 455153 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGT--CGATGGTATCAGAGC 455096 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || || || |||||||| || |||||||||||||| Sbjct 455095 TTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||||||||||||||| |||| || || | || || Sbjct 455756 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 455697 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||| ||||| || |||||||| | ||| | ||||||||| ||| Sbjct 455696 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 455637 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| || | || ||| |||| ||||| | || || || || | || || ||||| Sbjct 455636 ATCTTC-GCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 455578 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| || ||||| ||||| Sbjct 455577 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 Score = 111 bits (122), Expect = 1e-19 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || ||||||||||| || ||||| || | ||| | ||| ||||| Sbjct 454916 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 454857 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 || ||||| ||| || ||| | |||||||||| || ||||| || | || | Sbjct 454856 TCTTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 454799 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 | ||||| || ||||||||||||||||| ||||||||| ||| Sbjct 454798 TAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCATGGTGT 454757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986460130066