Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 2e-35
seq512 138 3e-27
>seq1
Length=728537
Score = 165 bits (182), Expect = 2e-35
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| ||||| || ||||| || ||||| || || |||||||| ||
Sbjct 455044 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGAT 455103
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| || ||||| || || ||||| || ||||||||
Sbjct 455104 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAG 455163
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || ||||||||||| || || ||||| || | |||||| ||||||| || |
Sbjct 455164 CGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAATATT 455223
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| || || || || ||||| || ||| | ||| ||
Sbjct 455224 CAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 455262
Score = 145 bits (160), Expect = 2e-29
Identities = 136/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || ||||| || || || ||||| || || ||||| || |||
Sbjct 454765 CAAATTTTCGTGAAGACCCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 454824
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| || ||||| || || |||||||| |||||||||
Sbjct 454825 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAA 454884
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | ||||| || || || ||||| |||||||| |||||||| |||| ||
Sbjct 454885 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 454937
Score = 145 bits (160), Expect = 2e-29
Identities = 136/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| |||||||| || ||||| || ||||| || ||||| ||| ||| |||
Sbjct 455272 CAGATTTTCGTCAAAACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 455331
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 455332 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 455391
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | |||||||||||||| || || || ||||| | ||| | | |||||
Sbjct 455392 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 455444
Score = 141 bits (156), Expect = 2e-28
Identities = 155/205 (76%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997
||| || || || || ||||| || || || ||| ||| || |||||||| || ||
Sbjct 455849 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAATGT 455905
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
||| ||||| || ||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 455906 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 455965
Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117
||||||||| || |||||||| | |||||| ||||||| || ||||||| || || ||
Sbjct 455966 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTAC 456025
Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||| | ||| ||
Sbjct 456026 CCTCCATCTCGTCTTGCGTCTCCGA 456050
Score = 131 bits (144), Expect = 4e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || ||||| || ||||| || || || || || |||
Sbjct 455551 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCTGAC 455610
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || |||||||||||||| ||||| || ||||| || ||||||
Sbjct 455611 ACTATAGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 455670
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || ||||| || || ||||| | |||||| |||| || ||| ||
Sbjct 455671 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 455730
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 455731 CAAAAGGAGTCTACCCTTCACCTTGTT 455757
>seq512
Length=93957
Score = 138 bits (152), Expect = 3e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || ||||| || |||||||||||||| || ||| ||||||||||| || |||||
Sbjct 79278 TCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAA 79219
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| |||||||| || || ||||| || |||||||| ||| | |||||||||||
Sbjct 79218 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGG 79159
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| |||||||| || || ||||| ||| | || ||
Sbjct 79158 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 79123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203717350320212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |