Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 165 2e-35 seq512 138 3e-27 >seq1 Length=728537 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || ||||| || ||||| || || |||||||| || Sbjct 455044 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGAT 455103 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 455104 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAG 455163 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||||||||| || || ||||| || | |||||| ||||||| || | Sbjct 455164 CGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAATATT 455223 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||||| || ||| | ||| || Sbjct 455224 CAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 455262 Score = 145 bits (160), Expect = 2e-29 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || || || ||||| || || ||||| || ||| Sbjct 454765 CAAATTTTCGTGAAGACCCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 454824 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || || |||||||| ||||||||| Sbjct 454825 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAA 454884 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| || || || ||||| |||||||| |||||||| |||| || Sbjct 454885 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 454937 Score = 145 bits (160), Expect = 2e-29 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 455272 CAGATTTTCGTCAAAACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 455331 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 455332 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 455391 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | |||||||||||||| || || || ||||| | ||| | | ||||| Sbjct 455392 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 455444 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997 ||| || || || || ||||| || || || ||| ||| || |||||||| || || Sbjct 455849 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAATGT 455905 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 ||| ||||| || ||||| || || ||||| || || ||||||||||| |||||||| Sbjct 455906 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 455965 Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 ||||||||| || |||||||| | |||||| ||||||| || ||||||| || || || Sbjct 455966 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTAC 456025 Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||| | ||| || Sbjct 456026 CCTCCATCTCGTCTTGCGTCTCCGA 456050 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||| || || || || || ||| Sbjct 455551 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCTGAC 455610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| ||||| || ||||| || |||||| Sbjct 455611 ACTATAGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 455670 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || || ||||| | |||||| |||| || ||| || Sbjct 455671 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 455730 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || || |||||| Sbjct 455731 CAAAAGGAGTCTACCCTTCACCTTGTT 455757 >seq512 Length=93957 Score = 138 bits (152), Expect = 3e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || |||||||||||||| || ||| ||||||||||| || ||||| Sbjct 79278 TCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAA 79219 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || ||||| || |||||||| ||| | ||||||||||| Sbjct 79218 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGG 79159 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| |||||||| || || ||||| ||| | || || Sbjct 79158 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 79123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717350320212