Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
15.1_202017-07-20] 494 sequences; 18,606,003 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq328 105 3e-17
seq296 84.2 9e-11
>seq328
Length=35194
Score = 105 bits (116), Expect = 3e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 33187 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 33246
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || || ||||| ||||| || || |||||||| ||
Sbjct 33247 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 33306
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || || |||||| | || || ||||||||||| || ||||| | | ||||| |||
Sbjct 33307 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 33366
Query 391230 ATTGATAAGGA 391240
|| | |||||
Sbjct 33367 ATCCAAAAGGA 33377
Score = 102 bits (112), Expect = 3e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||| || || ||||| ||||| || || || || |||
Sbjct 33694 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 33753
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || |||| || ||||| || |||||||| ||||||||||||||
Sbjct 33754 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 33813
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| || ||||| | || ||||||||||| ||||| | ||| | | || || ||
Sbjct 33814 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 33873
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || ||||||
Sbjct 33874 ATCCAAAAGGAATCTACCCTTCAC 33897
Score = 95.1 bits (104), Expect = 5e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130
|| || ||||| || || |||||||| || ||||| |||| ||| || | ||
Sbjct 33996 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 34055
Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190
|| || ||||| ||||| || || || |||||||| ||||| | || ||| | ||
Sbjct 34056 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 34115
Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240
||||||||||||||||| ||||| | | ||||| |||||| | |||||
Sbjct 34116 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGA 34165
Score = 91.5 bits (100), Expect = 6e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || ||||| ||||| |||||||| || || || ||
Sbjct 32908 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 32967
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || || || || || ||||| || || |||||||| ||
Sbjct 32968 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 33027
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214
||||| || || || | || || || ||||||||||| || |||
Sbjct 33028 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 33072
>seq296
Length=56937
Score = 84.2 bits (92), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
|||||||| ||||| || |||||||||||||| ||||| || || || || || |
Sbjct 272 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTC 213
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| | || | | || || |||| || ||||| || ||||| || | |||||
Sbjct 212 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 153
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|| || || || || || || ||||| ||| | |||| || || || || || ||
Sbjct 152 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 93
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452
||||| || |||||| | || || || ||
Sbjct 92 CCTACTGCCGCTGCTATCGCTTACGGTCT 64
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975705894937352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |