Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
15.1_202017-07-20] 494 sequences; 18,606,003 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq328 159 8e-34
seq157 102 2e-16
seq126 98.7 2e-15
>seq328
Length=35194
Score = 159 bits (176), Expect = 8e-34
Identities = 171/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||| ||||||||||||| ||||||
Sbjct 33408 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGT 33349
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || ||||| || ||||| || ||||| || | ||| || ||||| ||||| || ||
Sbjct 33348 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 33289
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || |||||| || || ||||| || ||| ||| |||||
Sbjct 33288 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGA---TTCGACTTC 33232
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||||| || || || || | ||||| ||||| | ||||||
Sbjct 33231 AAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33187
Score = 152 bits (168), Expect = 1e-31
Identities = 155/201 (77%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||||||||||||||||| ||||||
Sbjct 34196 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 34137
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| |||||||| || || || || |||||||| |||||||| || || || || || ||
Sbjct 34136 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 34077
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || ||||||||| || ||||| || ||| ||| |||||
Sbjct 34076 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 34020
Query 195096 AAGGGTAACCGTCTTTCCTGT 195116
||| || | ||||| || ||
Sbjct 34019 AAGAGTGATTGTCTTACCCGT 33999
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || || || ||||| || ||||| |||| |||||| | ||||| ||
Sbjct 33903 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 33844
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || ||||| || || || | |||||| || || |||||||| ||||| ||||| ||
Sbjct 33843 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 33784
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || || ||||| || || ||||| || || | |||||
Sbjct 33783 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 33724
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| |||||||| || || || | |||||
Sbjct 33723 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 33694
Score = 138 bits (152), Expect = 3e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019
|| |||| |||| ||||| || |||||||| ||||||||||| || ||||| | |||||
Sbjct 33088 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 33029
Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079
| ||||| ||||| || || || ||||| || || || |||||| || || |||||||
Sbjct 33028 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 32969
Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139
| ||| ||||||||||| || | ||||| || || | ||| || ||||| | |||||
Sbjct 32968 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 32909
Query 195140 T 195140
|
Sbjct 32908 T 32908
Score = 127 bits (140), Expect = 5e-24
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
||||||| | | ||||| ||||| || || ||||| || |||||||| | ||||||||
Sbjct 33592 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33533
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| |
Sbjct 33532 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33473
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| || | |||||||| || | ||| || ||||| | |||||
Sbjct 33472 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 33415
>seq157
Length=78573
Score = 102 bits (112), Expect = 2e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || || || || ||||||||||| || |||||||| | ||| ||||
Sbjct 51501 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTT 51560
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || ||||| || || ||||| || || || |||||| || || |||||||| |
Sbjct 51561 GGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 51620
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | |||||||| ||
Sbjct 51621 AGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 51654
>seq126
Length=110913
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||||||||| |||||| |||||||||||||||||| | || || | |||||||||
Sbjct 97756 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 97815
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | |||||| || |||||||||| || ||||| ||| || || |
Sbjct 97816 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTG 97875
Query 160707 AGACTCTTTATGAAAGATACGA 160728
| | |||||||| || |||||
Sbjct 97876 AAAAGCTTTATGAGAGCTACGA 97897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109474577674898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |