Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq126 168 8e-37 seq157 143 3e-29 seq328 114 2e-20 >seq126 Length=110913 Score = 168 bits (186), Expect = 8e-37 Identities = 716/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| ||||||| | || | || ||||||||| || | | |||||||| Sbjct 98490 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 98431 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | || || | ||| || |||||| || | ||||| || || || || | Sbjct 98430 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 98371 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 98370 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 98311 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || || ||||| || ||||| | ||||| ||| | || ||||| || || Sbjct 98310 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 98256 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | || || || || || || Sbjct 98255 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 98199 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 98198 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 98139 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 98138 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 98079 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 98078 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 98022 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||||||| ||||| || || ||||| || || Sbjct 98021 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 97962 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453 | | ||| || || ||||| | || | |||| | | | | || ||| | || Sbjct 97961 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 97905 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 97904 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 97845 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 97844 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 97785 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| || | ||||| |||| | || ||||| | | || |||| || | ||| || Sbjct 97784 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 97725 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 97724 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 97665 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | || ||||| ||| |||||| || || || |||||||||| | Sbjct 97664 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 97608 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 | || ||||| ||||| || || | || | |||||| || || ||| || Sbjct 97607 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 97548 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 97547 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 97488 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 97487 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 97428 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| ||||| || |||| || ||||| || ||||| || Sbjct 97427 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 97386 >seq157 Length=78573 Score = 143 bits (158), Expect = 3e-29 Identities = 296/432 (69%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | |||||||| | || |||||| || | Sbjct 70474 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 70533 Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 ||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| || Sbjct 70534 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 70592 Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802 | | ||||| |||| | ||| ||| ||| |||||||||||||| | | || Sbjct 70593 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 70651 Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 |||||||||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 70652 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 70711 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918 ||||| || ||| | || || || ||||| | ||| | | | Sbjct 70712 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 70767 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977 |||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| | Sbjct 70768 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 70826 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| | ||||||| | ||| ||| || | | || || | ||| ||| |||| Sbjct 70827 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 70886 Query 182038 GACCATCCGCCA 182049 |||| || |||| Sbjct 70887 GACCGTCGGCCA 70898 >seq328 Length=35194 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| ||||| || || || || || |||||| ||||| Sbjct 19002 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 19061 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | || | ||| ||| || || |||||||||| Sbjct 19062 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 19120 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||||||| ||||| |||| || || ||| |||| Sbjct 19121 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028121902400