Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq267 84.2 2e-11 >seq267 Length=62262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836 || |||| |||||||| || | | | |||| |||||| || || ||| | || Sbjct 23954 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 24013 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 ||||||| || ||||| ||||| |||| | || |||||| | ||| | Sbjct 24014 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCGCCGTCGGCATCAG 24073 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955 ||||| || ||||| |||||||||||||||||||| || || |||| || || | || Sbjct 24074 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCC 24133 Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 | | | ||| || ||| ||| ||||| || ||| |||| | | ||||||| Sbjct 24134 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCATCCCAGA 24190 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 || || ||| | |||||| |||||| || || || |||||||||| | Sbjct 24191 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 24250 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| | | ||||| | | || ||||| |||||||| || |||| Sbjct 24251 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 24301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||| ||||| || | | ||||| | | ||||| |||||| Sbjct 24301 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 24242 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || |||||| |||||| | ||| || ||||||||| | Sbjct 24241 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGATG 24182 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397 | |||| ||| || ||||| ||| ||| || ||| | | ||| | || | Sbjct 24181 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 24125 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | |||| || || |||||||||||||||||||| ||||| || ||||| | || Sbjct 24124 ATCTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 24065 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | |||||| || | |||| ||||| ||||| || ||||||||| | ||| Sbjct 24064 ACGGCGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 24005 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || || |||||| |||| | | | || |||||||| |||| || Sbjct 24004 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 23954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259631979680