Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq328 161 2e-34 seq157 138 3e-27 >seq328 Length=35194 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || ||||||||||| || || | ||| || | ||||| Sbjct 33905 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 33846 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | ||||| || |||||||||| |||||||||||| Sbjct 33845 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 33786 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 33785 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 33726 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| ||||| | |||||| Sbjct 33725 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33694 Score = 150 bits (166), Expect = 4e-31 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || ||| Sbjct 33572 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 33513 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || || |||||||||||| ||||||||| |||||| Sbjct 33512 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 33453 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || |||||||| || || | |||||| Sbjct 33452 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 33415 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| |||||||| |||||||| || || ||||| | ||||| ||||||||||| Sbjct 33074 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 33015 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || ||||||||||||||||| || || || ||||||||||| || || || Sbjct 33014 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 32955 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||||||||| || || | ||||| Sbjct 32954 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32908 Score = 132 bits (146), Expect = 1e-25 Identities = 146/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||||||||| ||||| || || ||||| | ||| || | |||||||| Sbjct 34184 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 34125 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || ||||| || ||||| || | || |||||||| || Sbjct 34124 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 34065 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 |||||| || ||||| |||||||| || ||| ||| || || |||||||| || Sbjct 34064 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCAAGAGTGATTGT 34008 Query 211082 CTTTCCCGTGAGA 211094 ||| ||||| ||| Sbjct 34007 CTTACCCGTAAGA 33995 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||||||||| |||||||| || ||||| | ||| || | || ||||| Sbjct 33396 GACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTCTTC 33337 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || ||||| || | || || ||||||||||| | || |||||||| || Sbjct 33336 AAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTG 33277 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 |||||| || || || |||||||| || ||| ||| || || || || || || Sbjct 33276 GATCTTGGCCTTGACATTGTCGATGGTATC---GCTCGATTCGACTTCAAGGGTAATGGT 33220 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | ||||| Sbjct 33219 TTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33187 >seq157 Length=78573 Score = 138 bits (152), Expect = 3e-27 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||||||||| || || || |||||||| || |||||||| | || |||||| Sbjct 51503 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 51562 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| |||| || ||||||||||||||||| || || || ||||||||||| ||| Sbjct 51563 TCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 51622 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||||||||| ||||| |||||||| || ||| Sbjct 51623 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAGA 51658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144663292310