Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq328 141 2e-28 seq157 109 1e-18 >seq328 Length=35194 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||||||||| || ||||||| ||||||||||| | |||| Sbjct 33407 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 33348 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| || ||||| || | ||| || ||||| || || ||||| Sbjct 33347 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCC 33288 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| |||||||| || | ||| || || | Sbjct 33287 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGG 33228 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| || | ||||| | ||| | |||||| Sbjct 33227 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33187 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||||||||| || ||||| | ||||||||||| | |||| Sbjct 34195 CGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTT 34136 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || || |||||||| |||||||| || || || || ||||| Sbjct 34135 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 34076 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || |||||||| || | ||| || || | Sbjct 34075 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 34016 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 34015 GTGATTGTCTTACCCGT 33999 Score = 132 bits (146), Expect = 1e-25 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 |||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| | Sbjct 33085 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 33026 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655 |||| || || ||||| |||||||| |||||||| ||| ||| ||||||||||| | Sbjct 33025 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 32966 Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | | ||||| || | ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 32965 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32908 Score = 129 bits (142), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || ||||||| | |||||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 33595 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 33536 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || || ||||| |||||||| || ||||| ||| ||| || ||||||| Sbjct 33535 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT 33476 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | |||| ||| || || | ||||| ||||| || || | ||| || | ||| | |||| Sbjct 33475 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 33416 Query 225713 T 225713 | Sbjct 33415 T 33415 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| ||||||| ||||| |||| | ||| | ||||| Sbjct 33905 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 33846 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || | |||||| || || || ||||||||||||||||| Sbjct 33845 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 33786 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 33785 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 33726 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||||||| || Sbjct 33725 TTTCCGGTCAAAGTCTT 33709 >seq157 Length=78573 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || || || || || |||||||| || |||||||| | ||| |||||||| || |||||| Sbjct 51515 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGAATA 51574 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||| ||| ||| ||||||||||| |||| || || || Sbjct 51575 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCG 51634 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| ||||| || || Sbjct 51635 AGGGTGATGGTCTTTCCGGT 51654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523652022836