Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 15.1_202017-07-20] 494 sequences; 18,606,003 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq126 100 4e-16 seq7 89.7 7e-13 >seq126 Length=110913 Score = 100 bits (110), Expect = 4e-16 Identities = 293/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| ||| ||||||||| || || |||| || | | ||||||||| || || || Sbjct 97886 ATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 97827 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||| | | ||| || ||||| | || || ||||| || ||||| | ||||| || Sbjct 97826 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 97767 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093 || || ||||| || | || || || || || ||||| ||||| || | Sbjct 97766 GGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 97708 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 || || | | ||||| ||||| || || ||||| || || | | ||||| || | Sbjct 97707 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 97648 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||||| || ||||| | |||| || ||| | ||| ||| | ||| ||||| | Sbjct 97647 TGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 97588 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 | ||||| || ||||| || || | ||| || || | || || ||||| || Sbjct 97587 TGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 97528 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 || | || || || || || |||| || || |||| || || | ||||||| Sbjct 97527 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 97468 Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362 ||||||| || || ||||||| ||||| Sbjct 97467 AGATACCATCAATGGAGTCATCCTTCATG 97439 >seq7 Length=206228 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || ||||| ||||| || || ||||| |||||||| || || ||||| | || | || Sbjct 172107 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 172048 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | ||| || ||||| || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 172047 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 171988 Query 48282 GC 48283 || Sbjct 171987 GC 171986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664510420160