Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
15.1_202017-07-20] 494 sequences; 18,606,003 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq328 129 4e-25
>seq328
Length=35194
Score = 129 bits (142), Expect = 4e-25
Identities = 173/235 (74%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | ||| || || || || ||| |||||||||||| ||||||||
Sbjct 33417 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 33358
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | || |||| || || ||||| ||||| || ||||| |||||||| ||
Sbjct 33357 GGAAAGAGTTCG-GC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCA 33300
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282
| ||| | ||| ||||| || ||||| ||| || ||| | ||||| ||| |
Sbjct 33299 GGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGT--CGATGGTATCGCTCG 33242
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || | ||||| || || || |||||||| || ||||||||||||||
Sbjct 33241 ATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33187
Score = 107 bits (118), Expect = 1e-18
Identities = 122/162 (75%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || |||||||| || ||||||||||| || ||||| || | ||| | ||| |||||
Sbjct 33062 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 33003
Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
||| ||||| ||| || ||| | |||||||||| || ||||| || | || |
Sbjct 33002 TCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 32945
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342
| ||||| || ||||| ||||| ||||| ||||||||| |||
Sbjct 32944 TAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGT 32903
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || ||||||||||||||||| |||| || || | || ||
Sbjct 33902 ACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 33843
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || || ||||| ||||| || |||||||| | ||| | ||||||||| |||
Sbjct 33842 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 33783
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| || | || ||| | || ||||| | || || || || | || || |||||
Sbjct 33782 ATCTTC-GCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 33724
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | ||||| || ||||| |||||
Sbjct 33723 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 33694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988232632798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |