Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 25.1_202017-07-20] 568 sequences; 18,568,655 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq388 143 3e-29 seq163 109 7e-19 >seq388 Length=79685 Score = 143 bits (158), Expect = 3e-29 Identities = 184/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||||| | || | |||||||| || || || Sbjct 63502 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63561 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 63562 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63621 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 63622 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63681 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 63682 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63741 Query 33818 AAAGAGATAGTTT 33830 |||||| ||||| Sbjct 63742 AAAGAGGAAGTTT 63754 >seq163 Length=98388 Score = 109 bits (120), Expect = 7e-19 Identities = 595/953 (62%), Gaps = 69/953 (7%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || || |||| | | | | || ||| || || | |||||||| | | Sbjct 84123 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 84064 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 84063 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 84004 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 84003 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 83946 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 83945 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 83886 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 83885 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 83826 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 83825 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 83767 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || || | || ||||| || || || | || || ||||| || Sbjct 83766 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 83707 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || ||| ||||| ||||| | || || || ||||||||| | || | ||| Sbjct 83706 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 83647 Query 63665 TCCCGCATTAAATA---------------------AG----------------------- 63680 || || || || | || Sbjct 83646 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 83587 Query 63681 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 ||||| ||||| || || || | | ||||| | ||||| || ||||| || Sbjct 83586 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 83527 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 || ||| || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 83526 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 83467 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || ||||| ||| || || | | | ||| ||| | || | ||| || ||||| | Sbjct 83466 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 83407 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | |||||||| | |||||||| || || |||||| | || | ||| ||||||| | Sbjct 83406 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 83350 Query 63916 TGTTAACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 63970 ||| | | | || || || || | ||| || |||||||| || || | || Sbjct 83349 TGTCCATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTT 83292 Query 63971 AGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028 || || || | || || || || | | || || || | || || || ||| Sbjct 83291 GGGGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCC 83234 Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || || || || || || || |||| ||| || || || |||||||||||||| Sbjct 83233 TTATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 83181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813128295040