Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 25.1_202017-07-20] 568 sequences; 18,568,655 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq388 107 1e-18 >seq388 Length=79685 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || || | ||||| |||| ||||||||| | |||||||||||| | || || |||| Sbjct 77898 AAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTCT 77839 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | ||| || ||||| |||||||||||||| || || | || | ||| || || || Sbjct 77838 TCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 77779 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | ||||| || | | || |||| | ||||| || | || || ||| Sbjct 77778 TGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTT 77719 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || ||||| || || |||||||| Sbjct 77718 TTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77687 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| ||||| | ||||| | || || | |||||| || |||||| Sbjct 78384 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 78325 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||||||| || ||||| | || | |||||| || || ||| ||| | | || || | Sbjct 78324 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGTT 78266 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | |||||| || | || ||||| |||||||| | ||| || || Sbjct 78265 GTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGAC 78206 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 78205 AAAGATCTGCAT 78194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366959968944