Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
25.1_202017-07-20] 568 sequences; 18,568,655 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq388 131 2e-25
seq5 86.0 8e-12
>seq388
Length=79685
Score = 131 bits (144), Expect = 2e-25
Identities = 181/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || ||| ||| |||||||| |||| | || | ||||| || || || ||
Sbjct 63502 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63561
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183
|| ||||| || || ||||| |||||||| || || ||||| || || ||||| |||||
Sbjct 63562 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63621
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 42240
||| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 63622 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63681
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 63682 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63741
Query 42301 AAAGAGATAGTTT 42313
|||||| |||||
Sbjct 63742 AAAGAGGAAGTTT 63754
>seq5
Length=214507
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139
|||| |||||||| ||||| || || ||||| ||||| || ||||| ||||| | ||
Sbjct 177798 TGCATCCCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCT 177739
Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199
| ||| || | ||| || || | ||||| || ||||||||||| || ||||| ||
Sbjct 177738 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 177679
Query 42200 GCAAAGGCAATAAGTCT 42216
||||| || | |||||
Sbjct 177678 GCAAAAGCCACCAGTCT 177662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134434911680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |