Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
25.1_202017-07-20] 568 sequences; 18,568,655 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq388 149 8e-31
seq163 114 2e-20
>seq388
Length=79685
Score = 149 bits (164), Expect = 8e-31
Identities = 185/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| || || ||| ||| ||||||||||||| | || || ||||| || || || ||
Sbjct 63502 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 63561
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| || || ||||| |||||||| || ||||| ||||| || ||||| |||||
Sbjct 63562 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 63621
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 63622 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 63681
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 63682 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 63741
Query 33540 AAAGAGATAGTTT 33552
|||||| |||||
Sbjct 63742 AAAGAGGAAGTTT 63754
>seq163
Length=98388
Score = 114 bits (126), Expect = 2e-20
Identities = 596/951 (63%), Gaps = 65/951 (7%)
Strand=Plus/Minus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
||| || || || || |||| | | | | |||||| || || | |||||||| | |
Sbjct 84123 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 84064
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 84063 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 84004
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63314
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 84003 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 83946
Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 83945 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 83886
Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 83885 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 83826
Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63493
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 83825 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 83767
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
||| || || || || | || ||||| || || || | || || ||||||||
Sbjct 83766 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 83707
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613
|| ||| ||||| ||||| | || || || ||||||||| | || |||
Sbjct 83706 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 83647
Query 63614 TCCCGCATTAAATA---------------------AG----------------------- 63629
|| || || || | ||
Sbjct 83646 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 83587
Query 63630 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684
||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 83586 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 83527
Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 83526 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 83467
Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804
|| || |||||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 83466 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 83407
Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63864
| |||||||| | |||||||| || || |||||| | |||| ||| ||||||| |
Sbjct 83406 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 83350
Query 63865 TGTTAACTATATCCATGGTGA-TACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAG 63921
||| | | | || || || | | | ||| || |||||||| || || | || |
Sbjct 83349 TGTCCATGACAACCTTGTAGACGTCATCATCAATCATGGGAGAATGCTTGCCGGTCTTGG 83290
Query 63922 GATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 63979
| || || | || || || || | | || || || | || || || |||||
Sbjct 83289 GGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCCTT 83232
Query 63980 GTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|| || || || | || |||| ||| || || || ||||||||||||||
Sbjct 83231 ATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 83181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942777074880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |