Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
25.1_202017-07-20] 568 sequences; 18,568,655 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq388 111 2e-19
>seq388
Length=79685
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | || | | | || |||||||| ||||||||||||
Sbjct 78420 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 78361
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||| ||||||||||| | | | || | || || || || |||||
Sbjct 78360 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 78301
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|||||||| ||||| ||| | || | |||| ||| || | ||||| | |||||| |
Sbjct 78300 ATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGTTG-TCGATAGTGTCAGACGACTCGA 78243
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| |||| || | || || || |||| ||| || ||||| ||||||||
Sbjct 78242 CTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78194
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | |||||| || | ||| | | ||||||||||| || ||||| |||
Sbjct 77913 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 77854
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||| || ||||| || |||| | || | ||||| ||||| |||||
Sbjct 77853 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 77794
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | |||| || | ||| ||| |||| || ||
Sbjct 77793 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTG-TCGATGGTATCGCTCGATTCGAC 77735
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||| || || || ||||| || || || |||||
Sbjct 77734 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258876536960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |