Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 25.1_202017-07-20] 568 sequences; 18,568,655 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq388 107 5e-18 >seq388 Length=79685 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| || |||||||| ||||||||||||| ||||| || | | ||| Sbjct 77908 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGT 77849 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| || |||||||||||||| || | ||||||||||| ||| || || Sbjct 77848 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 77789 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| || |||| ||| || | | ||| || || | Sbjct 77788 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAG 77729 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| || || ||||| Sbjct 77728 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 77690 Score = 104 bits (114), Expect = 6e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || ||| || |||||||| ||||||||||| | ||||| || | | ||| Sbjct 78696 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 78637 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || ||||||||||||||||| || ||||| || || || || Sbjct 78636 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 78577 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| || |||| ||| || | | ||| || || | Sbjct 78576 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAG 78517 Query 199588 CGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||||||||| ||| Sbjct 78516 AGTGATTGTCTTACCCGTAAGA 78495 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || || |||||||||| ||||||||| | | ||| | ||||| Sbjct 78405 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78346 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || || || | || ||||| || ||| ||| ||||| ||| Sbjct 78345 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78286 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 78285 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 78226 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| || || Sbjct 78225 TTTCCGGTCAAAGTCTTGACAAAGATCTG 78197 Score = 95.1 bits (104), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 |||| |||| |||||| | ||||| ||||| ||||||||||||||||| | || || | Sbjct 78092 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 78033 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| || || || ||||||||||| ||| || || | |||||| | Sbjct 78032 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 77973 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||| || || | ||||| ||||| || || ||||| || || ||||| || Sbjct 77972 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 77918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913020398056