Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 25.1_202017-07-20] 568 sequences; 18,568,655 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq388 105 3e-17 seq355 96.9 1e-14 >seq388 Length=79685 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 77687 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 77746 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || || ||||| ||||| || || |||||||| || Sbjct 77747 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 77806 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || |||||| | || || ||||||||||| || ||||| | | ||||| ||| Sbjct 77807 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 77866 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 77867 ATCCAAAAGGA 77877 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || ||||| ||||| || || || || ||| Sbjct 78194 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 78253 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || |||| || ||||| || |||||||| |||||||||||||| Sbjct 78254 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78313 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||| ||||| | ||| | | || || || Sbjct 78314 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 78373 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 78374 ATCCAAAAGGAATCTACCCTTCAC 78397 Score = 100 bits (110), Expect = 1e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || |||||||| || ||||| |||| ||| || | | || Sbjct 78496 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 78555 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| ||||| || || || |||||||| ||||| | || ||| | || Sbjct 78556 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 78615 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 ||||||||||||||||| ||||| | | ||||| |||||| | ||||| Sbjct 78616 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGA 78665 Score = 91.5 bits (100), Expect = 6e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || ||||| ||||| |||||||| || || || || Sbjct 77408 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 77467 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || || || ||||| || || |||||||| || Sbjct 77468 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 77527 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 ||||| || || || | || || || ||||||||||| || ||| Sbjct 77528 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 77572 >seq355 Length=11084 Score = 96.9 bits (106), Expect = 1e-14 Identities = 244/368 (66%), Gaps = 15/368 (4%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 |||||||| ||||| || |||||||||||||| ||||| || || || || || | Sbjct 368 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTC 309 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| | || | | || || |||| || ||||| || ||||| || | ||||| Sbjct 308 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 249 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || || || || ||||| ||| | |||| || || || || || || Sbjct 248 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 189 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaa 451479 ||||| || |||||| | || || || || | | ||||| | || || || Sbjct 188 CCTACTGCCGCTGCTATCGCTTACGGTCT-------TGACAAGAAGTCTGAGGGCGAGAA 136 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--CAATT 451537 || |||| | || || ||||||| || ||| | || ||| | ||| | ||| Sbjct 135 GAACGTTTTGATCTTCGACCTTGGTGGTGGTACT--TTCGACGTCTCTCTTTTGACTATT 78 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || || || | || || || ||||| ||| |||||| ||||| || || ||||| || Sbjct 77 GAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGAC 18 Query 451598 ATTGATAA 451605 |||| || Sbjct 17 TTTGACAA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975704021709344