Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220 25.1_202017-07-20] 568 sequences; 18,568,655 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq355 190 3e-43 seq352 167 3e-36 seq163 129 7e-25 seq68 123 3e-23 seq90 84.2 3e-11 >seq355 Length=11084 Score = 190 bits (210), Expect = 3e-43 Identities = 259/359 (72%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 13 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 72 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || || || || ||||||||||| ||||| || || | ||| Sbjct 73 TCCTCAATAGTCAAAAGAGAGACGTCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 132 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 133 TTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 192 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| | || || ||||| | | || || || || || || || Sbjct 193 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 251 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || ||||| |||||||| ||||| || || || || | | ||| | |||||| Sbjct 252 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACCGAG 311 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || | || || | || ||||| || ||||||||||| || ||||||||||||| || Sbjct 312 GTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATCTCTTCAGGCG 370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||||||||||||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 738 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACATGAATAGGTAGTGCCCAAGT 797 Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160 |||||||||| |||| ||||| || Sbjct 798 CAATACCGATAGCTTTTGTCATGTT 822 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||||| ||||| ||| | || || | || ||| || | Sbjct 486 GATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAACTTCGGCATCGTTAAATTTACG 545 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| ||||| ||||| ||||| | || ||||| || ||||||||| Sbjct 546 GCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCTT 605 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || |||||||| ||||| | || | || || || || ||||| || || Sbjct 606 CGCGGCATCACCGATAAGTCGTTC---AGAGTCATTGAAAGCAACATATGATGGTGTTGT 662 Query 8056 TCGATTCCCTTGGTCGTTCGC 8076 |||||| || || ||||| || Sbjct 663 TCGATTGCCCTGATCGTTGGC 683 >seq352 Length=177820 Score = 167 bits (184), Expect = 3e-36 Identities = 251/354 (71%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 177533 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 177474 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || || || || ||||||||||| ||||| || || | ||| Sbjct 177473 TCCTCAATAGTCAAAAGAGAGACGTCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 177414 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 177413 TTCTTCTCGCCCTCGGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 177354 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| | || || ||||| | | || || || || || || || Sbjct 177353 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 177295 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || ||||| |||||||| ||||| || || || || | | ||| | ||| || Sbjct 177294 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCCTTGGAGACGGTGCCACCAAG 177235 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || || | || ||||| ||| |||| ||||| || || || ||||| Sbjct 177234 GTAAGCCTCAGCAGTCTCCTTCATCTTGATAAGGACCATGGAAGAGATTTCTTC 177181 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | ||| | ||||| ||| | || |||| ||| |||||||| Sbjct 177063 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 177004 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || |||||||| ||||| | ||||||||||| |||||||| Sbjct 177003 CCAATCAATCGCTTGGCGTCAAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 176944 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || || | || | || |||||||| || || || ||| Sbjct 176943 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 176887 Query 8057 CGATTCCCTTGGTCGTTCGC 8076 || || || ||||||||||| Sbjct 176886 CGGTTACCCTGGTCGTTCGC 176867 >seq163 Length=98388 Score = 129 bits (142), Expect = 7e-25 Identities = 703/1115 (63%), Gaps = 23/1115 (2%) Strand=Plus/Minus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| | Sbjct 84736 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 84677 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 ||| || ||||||||||| || |||| || || | |||||||| || || |||| Sbjct 84676 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 84617 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049 | || | || ||||||| || | || | || |||| | ||| | | || | Sbjct 84616 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 84557 Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109 | |||| || |||||||| ||||||| ||| | || | || ||||| || || ||| Sbjct 84556 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA--GTT 84499 Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167 | | | || ||| || |||| || || ||| | ||| |||||| Sbjct 84498 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 84439 Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224 | || |||| | || || | || || || || || || ||| | || || Sbjct 84438 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGG--TCTAC 84382 Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284 | | || | || | || || |||||||| || || ||| || | | | | Sbjct 84381 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 84322 Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344 ||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| || Sbjct 84321 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 84262 Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404 ||| || || || ||||| || || ||| || || || |||| | | Sbjct 84261 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 84202 Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464 | || || ||||| || | ||| | | ||| || | | || | || Sbjct 84201 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 84142 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524 ||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || || Sbjct 84141 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 84082 Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584 | ||||| | | | ||||| ||||||||||| || || |||||||| | ||| | Sbjct 84081 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 84022 Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642 ||||| | ||| | || || || ||| |||| |||| || | ||| || ||| Sbjct 84021 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 83964 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | || | || || | | ||| |||||||| || || | ||||| || | | Sbjct 83963 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 83904 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | ||||| || |||||| || |||| || || | || || |||| Sbjct 83903 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 83847 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| ||||| || || | ||| ||||| || || ||| | || || ||| Sbjct 83846 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 83787 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | || ||||| ||| | |||||||| || || ||| ||| | ||||| Sbjct 83786 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 83727 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||| || || || ||||| | || | ||||| || ||| Sbjct 83726 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 83667 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||||| |||| ||| ||||| || ||||| || Sbjct 83666 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 83632 >seq68 Length=33724 Score = 123 bits (136), Expect = 3e-23 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||| | |||||||| || |||||||| || | || || || || | ||||| | | Sbjct 15216 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 15157 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | | || || || ||| || | || ||||| | |||||| |||||| Sbjct 15156 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 15097 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||||| || |||||||| | || || || || || || || ||||| ||| Sbjct 15096 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 15037 Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | ||| || | |||| | | | || ||||| || ||||||||||||| ||| || | Sbjct 15036 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 14979 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| ||||| || || || | |||| || |||||||| || ||||| || || | Sbjct 14978 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 14919 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | ||||| || |||||||| || || || || || ||||| | | || || || || Sbjct 14918 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 14860 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | || || || ||||| |||||||| || || Sbjct 14859 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 14825 >seq90 Length=78456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397 |||||||||||||| ||||| ||||||||||| || || || || | ||| || Sbjct 70656 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 70715 Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457 || || || || || |||||||| ||||| || | |||| | ||||| Sbjct 70716 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 70775 Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516 || |||||||| | ||||| ||||||||||| |||| | || || ||||| ||||| Sbjct 70776 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 70834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128290557120