Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
25.1_202017-07-20] 568 sequences; 18,568,655 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq163 228 9e-55
seq388 113 5e-20
seq5 82.4 8e-11
>seq163
Length=98388
Score = 228 bits (252), Expect = 9e-55
Identities = 801/1237 (65%), Gaps = 34/1237 (3%)
Strand=Plus/Plus
Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276
||||||||||||||||| | || || ||||| || ||||| ||||| ||||||
Sbjct 83632 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 83691
Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336
|||||| |||||| || |||||||| || |||||| || || || |||||||||
Sbjct 83692 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 83751
Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395
|||| ||||| || | ||| | | | |||||||| ||| || | || ||
Sbjct 83752 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 83810
Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455
|| || || || |||| ||| | || |||||||| | | | || ||| || |
Sbjct 83811 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 83870
Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515
||||| | || || || ||| || || | ||||||||||| || ||||| ||
Sbjct 83871 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 83930
Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575
|||||| || || | || ||| | || | | |||||| ||| | |||||| | ||
Sbjct 83931 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 83990
Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635
||| || || ||| ||| | ||||| | || || |||||| || || ||
Sbjct 83991 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 84050
Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| | || ||| || ||||| ||||| ||| |||||||| || ||||||| ||||
Sbjct 84051 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 84109
Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754
| || | || | || | || || |||| |||||| | | |||
Sbjct 84110 GTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 84169
Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814
|| |||| | | | ||| | | ||||| | || |||||| || || |
Sbjct 84170 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 84229
Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874
|||| ||||||||||| || || ||| ||||||| || || ||| || | || | ||||
Sbjct 84230 ACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 84289
Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934
| || ||||| |||||||||||||||||| ||| || || || ||| || |
Sbjct 84290 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 84349
Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985
||||||| || || || ||| || || | ||||| || ||| | || || |
Sbjct 84350 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTGGAACGTCGCGTCTATG 84406
Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045
|||| || || ||||| | ||| ||| || || || || | || |||
Sbjct 84407 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTGTAATCA 84466
Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102
|| |||| || || | | || ||| ||||| || || |||||||| |||||
Sbjct 84467 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGGCCTG 84523
Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162
| | | || |||||||| || ||||||| ||||||| || || | | ||||||
Sbjct 84524 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 84583
Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222
| |||| | || ||||| | ||||||||| | | ||||||||||| ||
Sbjct 84584 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCGCTTG 84643
Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282
|| || |||||||| ||| | ||| || | || || | | | | || || |||
Sbjct 84644 AGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 84703
Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336
|| |||||||||| ||| ||||||||||| ||| ||| || | | |
Sbjct 84704 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 84763
Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393
||| | || |||| ||||| ||| |||| | | ||||| ||||||||||
Sbjct 84764 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 84820
Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430
| || ||||| || ||||| || | || ||| ||||
Sbjct 84821 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 84857
Score = 206 bits (228), Expect = 3e-48
Identities = 792/1232 (64%), Gaps = 24/1232 (2%)
Strand=Plus/Minus
Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633
|||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | |
Sbjct 84857 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 84798
Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687
|| | | ||||| | |||| || | |||||||| || | | |
Sbjct 84797 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 84738
Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747
||||||||||| ||||||||||||| || || || || | | | | || ||
Sbjct 84737 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 84678
Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807
| || ||||| ||| |||||||||||| | || ||||||||||| | | ||||
Sbjct 84677 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 84618
Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867
||||| | ||||| || | |||| | |||||||| | || || ||||
Sbjct 84617 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 84558
Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927
|| | ||||| || |||||||| || | | | | || || |||||||||||| ||
Sbjct 84557 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTG 84498
Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984
|||||| || | | || || |||| || ||| || || ||||| ||
Sbjct 84497 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTA 84441
Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GAT-TTCCT--TTGATG 79038
|| ||| || | ||||| || || ||| ||| | || |||| | | |
Sbjct 84440 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACG 84381
Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097
|| | || || ||| || || || || || || || || || || || ||||
Sbjct 84380 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 84322
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||| |||||||| || || | ||| || |||||||| || | || ||| ||||||
Sbjct 84321 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 84262
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217
||| ||| || ||||||||||| ||||| || || ||||| ||| ||
Sbjct 84261 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 84202
Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277
||| | | || ||| | | | |||| || | ||| | | ||||| |
Sbjct 84201 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 84142
Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337
||| || || | || | || | || || || || |||| || || ||||||||
Sbjct 84141 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 84082
Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396
| ||||| ||||| || ||| ||| | || || || || |||||| || || |
Sbjct 84081 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 84023
Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456
|||||| ||||| ||| || || || || | |||||| | || |||||| |
Sbjct 84022 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 83963
Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516
| || | ||||| | | || |||||||| ||||| |||||||||||||| | ||
Sbjct 83962 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 83903
Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576
| |||||| || || || | ||||| || || ||| || | || |||||||||
Sbjct 83902 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 83843
Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636
| || | |||||||| || | || || || ||| || | || |||| || |
Sbjct 83842 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 83783
Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695
| || | | | ||| | || || || |||| ||||||||| || || || ||||
Sbjct 83782 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 83724
Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755
|| || |||||||| || || || ||||| |||||||| || || |||||||| |||
Sbjct 83723 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 83664
Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787
|| || || | |||||||||||||| ||
Sbjct 83663 ATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 83632
>seq388
Length=79685
Score = 113 bits (124), Expect = 5e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
|| ||||| |||||||| |||||| || |||||||||||||| || ||| | ||
Sbjct 63654 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63595
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
|||||||| || ||||| || |||||||| || || | ||||| |||||||| || ||
Sbjct 63594 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCT 63535
Query 60102 CGGGACGAGGGCCTCCA 60118
|| |||||||| |||||
Sbjct 63534 CGAGACGAGGGTCTCCA 63518
>seq5
Length=214507
Score = 82.4 bits (90), Expect = 8e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050
|||||||||||||||||||| || ||||| ||||| || || ||| || |||||| |
Sbjct 177671 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 177730
Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110
|| ||| | || | ||||| || |||| || || |||||| |||| |||| |||
Sbjct 177731 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGATGAG 177790
Query 60111 GGCCTCCAT-CAG-GAGTT 60127
|| | ||| ||| |||||
Sbjct 177791 GGGATGCATACAGTGAGTT 177809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548520905473920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |