Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
95.1_202017-07-20] 588 sequences; 18,602,782 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq395 143 3e-29
seq155 109 7e-19
>seq395
Length=35201
Score = 143 bits (158), Expect = 3e-29
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| ||||||||||||| | || | |||||||| || || ||
Sbjct 19027 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 19086
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| || || ||||| |||||||| || ||||| ||||| || || || |||||
Sbjct 19087 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 19146
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 19147 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19206
Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 19207 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19266
Query 33818 AAAGAGATAGTTT 33830
|||||| |||||
Sbjct 19267 AAAGAGGAAGTTT 19279
>seq155
Length=108377
Score = 109 bits (120), Expect = 7e-19
Identities = 595/953 (62%), Gaps = 69/953 (7%)
Strand=Plus/Minus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
||| || || || || |||| | | | | || ||| || || | |||||||| | |
Sbjct 97051 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 96992
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 96991 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 96932
Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 96931 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 96874
Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 96873 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 96814
Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 96813 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 96754
Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 96753 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 96695
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
||| || || || || | || ||||| || || || | || || ||||| ||
Sbjct 96694 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 96635
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664
|| ||| ||||| ||||| | || || || ||||||||| | || | |||
Sbjct 96634 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 96575
Query 63665 TCCCGCATTAAATA---------------------AG----------------------- 63680
|| || || || | ||
Sbjct 96574 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 96515
Query 63681 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735
||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 96514 TTACAGTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 96455
Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 96454 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 96395
Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855
|| ||||| ||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 96394 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 96335
Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915
| |||||||| | |||||||| || || |||||| | || | ||| ||||||| |
Sbjct 96334 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 96278
Query 63916 TGTTAACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 63970
||| | | | || || || || | ||| || |||||||| || || | ||
Sbjct 96277 TGTCCATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTT 96220
Query 63971 AGGATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCC 64028
|| || || | || || || || | | || || || | || || || |||
Sbjct 96219 GGGGTTGACCCA--TGCATGAAGGTCATGTACGACGGCAGAGAAGACCTTCTTGGTCTCC 96162
Query 64029 TTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|| || || || || || || |||| ||| || || || ||||||||||||||
Sbjct 96161 TTATGAAGGTTGGAAATAGCGATTCGGGCAGCAAGGATAGCATAATCCGGATG 96109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629812970840640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |