Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
95.1_202017-07-20] 588 sequences; 18,602,782 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq395 127 5e-24
seq9 100 7e-16
>seq395
Length=35201
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || || || ||||||| || |||||
Sbjct 34208 ACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 34149
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||||||| || || || || | || |||||||| || || || || || || ||
Sbjct 34148 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 34089
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || ||||| || | ||||||||| | ||| || || || || || ||||||
Sbjct 34088 ATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATTGTCTTA 34029
Query 104531 CCAGTAAG 104538
|| |||||
Sbjct 34028 CCCGTAAG 34021
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| || || || || ||||| || ||||| | ||| || || |||||||| |||
Sbjct 33915 GTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 33856
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | || ||||||||||| || ||||| || ||||||||||| || ||
Sbjct 33855 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 33796
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || || |||||||| || || | ||
Sbjct 33795 ACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTC 33736
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 33735 TTGACAAAGATCTGCAT 33719
Score = 114 bits (126), Expect = 3e-20
Identities = 131/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| ||||| | ||||| ||| || || ||||| ||||| || || || | | |||||
Sbjct 33615 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33556
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||||||||| || || ||||| || | ||| ||
Sbjct 33555 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33496
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||||| || || |||||||| || ||||| || || || || ||||||||
Sbjct 33495 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 33440
Score = 105 bits (116), Expect = 2e-17
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || ||||| || || ||||| || || || |||||||| || | | || ||
Sbjct 33108 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 33049
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||| ||||| || || ||||| || | ||| ||| |
Sbjct 33048 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 32989
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || || || ||||||||||| || || || || || || || |||||
Sbjct 32988 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32933
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||||||||| || || || ||||| ||||| || || ||||| || | ||||| |||
Sbjct 19172 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGC 19113
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
| ||||| |||| || ||||| || | || ||||||||||| | || | ||||
Sbjct 19112 TTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCTCGAGACG 19053
Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284
| ||| | ||| |||||| || |||
Sbjct 19052 AGGGTCTCCACACCGACTTTGCCTGT 19027
>seq9
Length=267956
Score = 100 bits (110), Expect = 7e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| || ||||| || |||||||| ||||||||||| || ||||| |||
Sbjct 231296 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 231355
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|| ||||| ||||| | ||||| ||| | || || || ||||| ||||| || |||||
Sbjct 231356 TTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATCAGTAGGGAT 231415
Query 269258 GAAGG 269262
|| ||
Sbjct 231416 GAGGG 231420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151389725652304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |