Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
95.1_202017-07-20] 588 sequences; 18,602,782 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq395 105 3e-17
seq344 96.9 1e-14
>seq395
Length=35201
Score = 105 bits (116), Expect = 3e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 33212 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 33271
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | | || || || ||||| ||||| || || |||||||| ||
Sbjct 33272 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 33331
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || || |||||| | || || ||||||||||| || ||||| | | ||||| |||
Sbjct 33332 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 33391
Query 391230 ATTGATAAGGA 391240
|| | |||||
Sbjct 33392 ATCCAAAAGGA 33402
Score = 102 bits (112), Expect = 3e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||| || || ||||| ||||| || || || || |||
Sbjct 33719 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 33778
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || |||| || ||||| || |||||||| ||||||||||||||
Sbjct 33779 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 33838
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| || ||||| | || ||||||||||| ||||| | ||| | | || || ||
Sbjct 33839 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 33898
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || ||||||
Sbjct 33899 ATCCAAAAGGAATCTACCCTTCAC 33922
Score = 100 bits (110), Expect = 1e-15
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130
|| || ||||| || || |||||||| || ||||| |||| ||| || | | ||
Sbjct 34021 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAG 34080
Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190
|| || ||||| ||||| || || || |||||||| ||||| | || ||| | ||
Sbjct 34081 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 34140
Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240
||||||||||||||||| ||||| | | ||||| |||||| | |||||
Sbjct 34141 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGA 34190
Score = 91.5 bits (100), Expect = 6e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || ||||| ||||| |||||||| || || || ||
Sbjct 32933 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 32992
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || || || || || ||||| || || |||||||| ||
Sbjct 32993 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 33052
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214
||||| || || || | || || || ||||||||||| || |||
Sbjct 33053 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 33097
>seq344
Length=11182
Score = 96.9 bits (106), Expect = 1e-14
Identities = 244/368 (66%), Gaps = 15/368 (4%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
|||||||| ||||| || |||||||||||||| ||||| || || || || || |
Sbjct 368 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTC 309
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| | || | | || || |||| || ||||| || ||||| || | |||||
Sbjct 308 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 249
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|| || || || || || || ||||| ||| | |||| || || || || || ||
Sbjct 248 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 189
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaa 451479
||||| || |||||| | || || || || | | ||||| | || || ||
Sbjct 188 CCTACTGCCGCTGCTATCGCTTACGGTCT-------TGACAAGAAGTCTGAGGGCGAGAA 136
Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--CAATT 451537
|| |||| | || || ||||||| || ||| | || ||| | ||| | |||
Sbjct 135 GAACGTTTTGATCTTCGACCTTGGTGGTGGTACT--TTCGACGTCTCTCTTTTGACTATT 78
Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597
|| || || | || || || ||||| ||| |||||| ||||| || || ||||| ||
Sbjct 77 GAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGAC 18
Query 451598 ATTGATAA 451605
|||| ||
Sbjct 17 TTTGACAA 10
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975703515431504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |