Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022220
95.1_202017-07-20] 588 sequences; 18,602,782 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq155 168 8e-37
seq146 143 3e-29
seq395 114 2e-20
>seq155
Length=108377
Score = 168 bits (186), Expect = 8e-37
Identities = 716/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927
|||||||||| ||||||| | || | || ||||||||| || | | ||||||||
Sbjct 97664 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 97605
Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987
||| | || || | ||| || |||||| || | ||||| || || || || |
Sbjct 97604 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 97545
Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 97544 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 97485
Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102
|| | || || ||||| || ||||| | ||||| ||| | || ||||| || ||
Sbjct 97484 AAG-----CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGA 97430
Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 97429 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTT 97373
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 97372 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTC 97313
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 97312 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 97253
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 97252 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 97196
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| ||| |||| |||||||||||| ||||| || || ||||| || ||
Sbjct 97195 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTG 97136
Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453
| | ||| || || ||||| | || | |||| | | | | || ||| | ||
Sbjct 97135 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 97079
Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513
|| | |||||| | || || |||||| || ||||| |||||| || ||
Sbjct 97078 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCC 97019
Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 97018 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 96959
Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633
||| || | ||||| |||| | || ||||| | | || |||| || | ||| ||
Sbjct 96958 AAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATG 96899
Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 96898 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 96839
Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747
|| | || ||||| ||| |||||| || || || |||||||||| |
Sbjct 96838 GAAGGCACC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTA 96782
Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807
| || ||||| ||||| || || | || | |||||| || || ||| ||
Sbjct 96781 AGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 96722
Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 96721 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 96662
Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 96661 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 96602
Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969
||| ||||| || |||| || ||||| || ||||| ||
Sbjct 96601 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 96560
>seq146
Length=92259
Score = 143 bits (158), Expect = 3e-29
Identities = 296/432 (69%), Gaps = 14/432 (3%)
Strand=Plus/Plus
Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684
||| ||||||||||| || | ||||| | | |||||||| | || |||||| || |
Sbjct 84281 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 84340
Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| ||
Sbjct 84341 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 84399
Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802
| | ||||| |||| | ||| ||| ||| |||||||||||||| | | ||
Sbjct 84400 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCT 84458
Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862
|||||||||||||| ||||| ||||||||||| || || || || || || |||
Sbjct 84459 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 84518
Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918
||||| || ||| | || || || ||||| | ||| | | |
Sbjct 84519 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 84574
Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977
|||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| |
Sbjct 84575 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 84633
Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037
|||| | ||||||| | ||| ||| || | | || || | ||| ||| ||||
Sbjct 84634 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 84693
Query 182038 GACCATCCGCCA 182049
|||| || ||||
Sbjct 84694 GACCGTCGGCCA 84705
>seq395
Length=35201
Score = 114 bits (126), Expect = 2e-20
Identities = 123/160 (77%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| ||||| || || || || || |||||| |||||
Sbjct 19030 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 19089
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776
||||||||||| |||||||| | ||| | || | ||| ||| || || ||||||||||
Sbjct 19090 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGC-GAAAGAACCAGAGAAGAAGA 19148
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|||||||||| ||||| |||| || || ||| ||||
Sbjct 19149 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628027383964800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |