Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022221 15.1_202017-07-20] 588 sequences; 18,516,783 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq153 183 4e-41 seq400 100 3e-16 seq135 100 3e-16 >seq153 Length=95437 Score = 183 bits (202), Expect = 4e-41 Identities = 678/1048 (65%), Gaps = 27/1048 (3%) Strand=Plus/Minus Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 ||||||| | ||| |||| ||||| || ||||| || || || ||||| || || || Sbjct 84668 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 84609 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 ||| | | || ||| | ||||||| || | | | || || | || | Sbjct 84608 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 84549 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | |||||||| ||||| ||||||| || ||||| |||||| ||| || || Sbjct 84548 CAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 84489 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 || || || |||| ||| ||| || | || ||||| || ||| ||| || | Sbjct 84488 GCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAACAACCTTGGTAA 84429 Query 110228 TTTCATGGAG---TTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGA 110284 | || || || |||| || || || || ||| ||| | || | || | Sbjct 84428 TCTCGTGCAGCTTTTTGAAGTCATAGA-CGCGA-CGT-TCCAGGTCTACGAAGGCAGGAA 84372 Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 |||||| ||| |||||||| || |||| | || || | || |||| |||| Sbjct 84371 GAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTT 84312 Query 110345 CCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 | ||||| | ||| ||| || ||| ||| | || ||| || || || ||||||| Sbjct 84311 CAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGT 84255 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 || |||||||| ||| ||||| ||| |||||| || || || | || ||| |||| Sbjct 84254 TGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGG 84195 Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCGTACTT 110519 | ||| | | || | ||| || |||| | || | | ||| |||| ||||| | Sbjct 84194 CGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGTAGCT 84137 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 || | | |||||||| | ||||| || || | ||| || || | |||| Sbjct 84136 CTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGG 84077 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 ||| | || | ||||| ||| | || || | ||||||||| || || | ||||| Sbjct 84076 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 84017 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 | || ||||||| ||||| || |||| || | ||| ||||| | || || Sbjct 84016 GAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 83957 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 | ||||| | | ||| | |||||| || || ||||||| |||| || || | | Sbjct 83956 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC---AGG 83900 Query 110760 ACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 ||| ||| | || | ||| || || |||||||| | | | | | ||||||||| Sbjct 83899 ACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGG 83840 Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873 ||| || || | ||| | |||||| ||||| ||| ||| || ||||| || | Sbjct 83839 AATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 83780 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTG 110932 ||| || || | |||||||||||| || ||| || || ||||| ||| |||| | Sbjct 83779 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-TGAGAG 83721 Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992 || | || ||||||||||| || || |||| |||| | || ||||| || ||||| | Sbjct 83720 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 83661 Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAG 111020 | || || || || || || ||||| || Sbjct 83660 GGGGTCGGGGAGTACCGGCGTTGAAAAG 83633 >seq400 Length=79726 Score = 100 bits (110), Expect = 3e-16 Identities = 210/308 (68%), Gaps = 19/308 (6%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| ||| || Sbjct 63539 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 63598 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| ||||| |||||||| Sbjct 63599 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 63658 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668 |||||||| || ||||| | || ||||| | ||| | ||| || ||| Sbjct 63659 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 63715 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || || | || | || || | Sbjct 63716 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 63774 Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 | || ||||| | || |||| |||||||| || | || ||||| |||| Sbjct 63775 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 63830 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 63831 TAGGTCTC 63838 >seq135 Length=11372 Score = 100 bits (110), Expect = 3e-16 Identities = 286/433 (66%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || | Sbjct 3394 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 3453 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 || ||||||||| |||||| || ||||||||||||| | | |||||| || Sbjct 3454 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 3513 Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536 | ||||| ||||| | ||| ||| ||| || || ||||| || | | || | Sbjct 3514 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCTG 3572 Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596 | || || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 3573 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 3632 Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650 | || || ||| || ||| || || ||| || || | || ||| Sbjct 3633 TGTT--ACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGG 3686 Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710 |||| || ||||| || || | || || | || || | || | ||| || ||||| | Sbjct 3687 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 3746 Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770 | || | |||| || | |||||| | | | |||||| || ||| |||||||| Sbjct 3747 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 3806 Query 167771 GACCATCTGCCAC 167783 |||| || ||||| Sbjct 3807 GACCGTCGGCCAC 3819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971671026400